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Bio-Affymetrix
Modules to parse files produced by Affymetrix software |
Bio-AGP-LowLevel
low-level functions for working with Accessioned Golden Path (AGP) files |
Bio-ASN1-EntrezGene
Parser for NCBI Entrez Gene (ASN.1-format) |
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Bio-BLAST
low-level routines for working with BLAST tools and formats |
Bio-BMI
Body Mass Index calculate |
Bio-Cellucidate
Perl library for cellucidate.com |
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Bio-Chado-Schema
A standard DBIx::Class layer for the Chado database schema. |
Bio-Chaos
utility class for handling Chaos-XML |
Bio-ConnectDots
Regular expression-based Perl Parser for NCBI Entrez Gene. |
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Bio-Das
Client-side library for Distributed Genome Annotation System |
Bio-DOOP-DOOP
DOOP API main module |
Bio-ECell
Perl interface for E-Cell Simulation Environment. |
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Bio-Emboss
Write EMBOSS programs in Perl |
Bio-FASTASequence
Perl extension for Bioinformatics. Parsing sequence informations. |
Bio-FASTASequence-File
Perl extension for Bio::FASTASequence |
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Bio-FdrFet
Perl extension for False Discovery Rate and Fisher Exact Test applied to pathway analysis. |
Bio-Genex |
Bio-GFF3
fast, low-level GFF3 manipulation |
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Bio-Glite
Web service wrapper for G-language System. |
Bio-GMOD
Unified Generic Model Organism Database API |
Bio-GMOD-Blast-Graph
display a graphical summary of a BLAST report |
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Bio-GMOD-GenericGenePage
An abstract implementation of a Generic Gene Page XML, with 2 exmples |
Bio-Graphics
Generate GD images of Bio::Seq objects |
Bio-Grep
Perl extension for searching in DNA and Protein sequences |
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Bio-Homology-InterologWalk
Retrieve, score and visualize putative Protein-Protein Interactions through the orthology-walk method |
Bio-KEGGI
Module to handle KEGG genome, ko and pathway files |
Bio-LITE-Taxonomy-NCBI
Lightweight and efficient NCBI taxonomic manager |
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Bio-LITE-Taxonomy-NCBI-Gi2taxid
Mappings of NCBI GIs to Taxids fast and with very low memory footprint. |
Bio-MAGE
microarray gene expression (MAGE) API |
Bio-MAGE-Utils
Classes for MAGE-OM |
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Bio-MAGETAB
A data model and utility API for the MAGE-TAB format. |
Bio-MCPrimers
Design molecular cloning PCR primers |
Bio-Medpost
Part of speech tagger for MEDLINE text |
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Bio-Metabolic
Perl extension for representing and simulating metabolic networks |
Bio-NEXUS
Bio::NEXUS - A NEXUS Application Programming Interface in Perl |
Bio-NEXUS-Import
Extends Bio::NEXUS with parsers for file formats of popular phylogeny programs |
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Bio-Phylo
Analysis and manipulation of phylogenies. |
Bio-PrimerDesigner
Design PCR primers using primer3 and epcr |
Bio-Prospect |
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Bio-Protease
Digest your protein substrates with customizable specificity |
Bio-SAGE-DataProcessing
Module to process raw data generated from SAGE libraries. |
Bio-SCF
Perl extension for reading and writting SCF sequence files |
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Bio-Tools-CodonOptTable
A more elaborative way to check the codons usage! |
Bio-Tools-DNAGen
Generating a pool of DNA sequences |
Bio-Tools-Prepeat
Finding repeats in protein sequences |
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Bio-Tools-Primer3Redux
BioPerl-based tools for Primer3 (redone) |
Bio-Trace-ABIF
Perl extension for reading and parsing ABIF (Applied |
Bio-Util-DNA
Basic DNA utilities |
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BioPerl
Bioinformatics Toolkit |
BioPerl-Run
BioPerl-Run - wrapper toolkit |
mGen |
| NCBI |
ora
Olfactory Receptor family Assigner (ORA) |
Polloc
Polymorphic Loci analysis |
| Problems, suggestions, or comments to Randy Kobes. | Questions? Check the FAQ. | |
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