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Distribution Bio-Chado-Schema [Download]
Author RBUELS [ Robert Buels ]
Version 0.08100
Abstract A standard DBIx::Class layer for the Chado database schema.
Released 21 Mar 2011
Size 205.2 KB
MD5 Checksum 62285aa92da7c2ea3ed200e0d96d9c58
Additional Files README   |   META   |   Changes   |   Makefile.PL   |  
Links search.cpan.org   |   CPAN::Forum  |   AnnoCPAN  |   rt.cpan.org  |   Rating  | CPANTS  | CPAN testers | Dependencies | Testers matrix
Prerequisites Bio::Root::Version  |   Carp::Clan  |   DBIx::Class  |   DBIx::Class::Core  |   DBIx::Class::ResultSet  |   DBIx::Class::Schema  |   DBIx::Class::Tree::NestedSet  |  

Modules

Bio::Chado::Schema  [source]   [v 0.08100] standard DBIx::Class interface to GMOD Chado
Bio::Chado::Schema::Result::CellLine::CellLine  [source]   [v 0.08100]
Bio::Chado::Schema::Result::CellLine::CellLineCvterm  [source]   [v 0.08100]
Bio::Chado::Schema::Result::CellLine::CellLineCvtermprop  [source]   [v 0.08100]
Bio::Chado::Schema::Result::CellLine::CellLineDbxref  [source]   [v 0.08100]
Bio::Chado::Schema::Result::CellLine::CellLineFeature  [source]   [v 0.08100]
Bio::Chado::Schema::Result::CellLine::CellLineLibrary  [source]   [v 0.08100]
Bio::Chado::Schema::Result::CellLine::CellLineprop  [source]   [v 0.08100]
Bio::Chado::Schema::Result::CellLine::CellLinepropPub  [source]   [v 0.08100]
Bio::Chado::Schema::Result::CellLine::CellLinePub  [source]   [v 0.08100]
Bio::Chado::Schema::Result::CellLine::CellLineRelationship  [source]   [v 0.08100]
Bio::Chado::Schema::Result::CellLine::CellLineSynonym  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Companalysis::Analysis  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Companalysis::Analysisfeature  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Companalysis::Analysisfeatureprop  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Companalysis::Analysisprop  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Composite::AllFeatureNames  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Composite::Dfeatureloc  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Composite::FeatureContains  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Composite::FeatureDifference  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Composite::FeatureDisjoint  [source]   [v 0.08100] featurelocs do not meet. symmetric
Bio::Chado::Schema::Result::Composite::FeatureDistance  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Composite::FeatureIntersection  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Composite::FeatureMeets  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Composite::FeatureMeetsOnSameStrand  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Composite::FeaturesetMeets  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Composite::FeatureUnion  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Composite::FLoc  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Composite::FnrType  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Composite::FpKey  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Composite::FType  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Composite::Gff3atts  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Composite::Gff3view  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Composite::Gffatts  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Contact::Contact  [source]   [v 0.08100] Model persons, institutes, groups, organizations, etc.
Bio::Chado::Schema::Result::Contact::ContactRelationship  [source]   [v 0.08100] Model relationships between contacts
Bio::Chado::Schema::Result::Cv::CommonAncestorCvterm  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Cv::CommonDescendantCvterm  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Cv::Cv  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Cv::CvCvtermCount  [source]   [v 0.08100] per-cv terms counts (excludes obsoletes)
Bio::Chado::Schema::Result::Cv::CvCvtermCountWithObs  [source]   [v 0.08100] per-cv terms counts (includes obsoletes)
Bio::Chado::Schema::Result::Cv::CvLeaf  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Cv::CvLinkCount  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Cv::CvPathCount  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Cv::Cvprop  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Cv::CvRoot  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Cv::Cvterm  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Cv::CvtermDbxref  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Cv::Cvtermpath  [v 0.08100]
Bio::Chado::Schema::Result::Cv::Cvtermprop  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Cv::CvtermRelationship  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Cv::Cvtermsynonym  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Cv::Dbxrefprop  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Cv::StatsPathsToRoot  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Expression::Eimage  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Expression::Expression  [source]   [v 0.08100] The expression table is essentially a bridge table.
Bio::Chado::Schema::Result::Expression::ExpressionCvterm  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Expression::ExpressionCvtermprop  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Expression::ExpressionImage  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Expression::Expressionprop  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Expression::ExpressionPub  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Expression::FeatureExpression  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Expression::FeatureExpressionprop  [source]   [v 0.08100]
Bio::Chado::Schema::Result::General::Db  [source]   [v 0.08100]
Bio::Chado::Schema::Result::General::DbDbxrefCount  [source]   [v 0.08100] per-db dbxref counts
Bio::Chado::Schema::Result::General::Dbxref  [source]   [v 0.08100]
Bio::Chado::Schema::Result::General::Tableinfo  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Genetic::Environment  [source]   [v 0.08100] The environmental component of a phenotype description.
Bio::Chado::Schema::Result::Genetic::EnvironmentCvterm  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Genetic::FeatureGenotype  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Genetic::Genotype  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Genetic::Phendesc  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Genetic::PhenotypeComparison  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Genetic::PhenotypeComparisonCvterm  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Genetic::Phenstatement  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Library::Library  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Library::LibraryCvterm  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Library::LibraryDbxref  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Library::LibraryFeature  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Library::Libraryprop  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Library::LibrarypropPub  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Library::LibraryPub  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Library::LibrarySynonym  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Mage::Acquisition  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Mage::Acquisitionprop  [source]   [v 0.08100] Parameters associated with image acquisition.
Bio::Chado::Schema::Result::Mage::AcquisitionRelationship  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Mage::Arraydesign  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Mage::Arraydesignprop  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Mage::Assay  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Mage::AssayBiomaterial  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Mage::AssayProject  [source]   [v 0.08100] Link assays to projects.
Bio::Chado::Schema::Result::Mage::Assayprop  [source]   [v 0.08100] Extra assay properties that are not accounted for in assay.
Bio::Chado::Schema::Result::Mage::Biomaterial  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Mage::BiomaterialDbxref  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Mage::Biomaterialprop  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Mage::BiomaterialRelationship  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Mage::BiomaterialTreatment  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Mage::Channel  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Mage::Control  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Mage::Element  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Mage::ElementRelationship  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Mage::Elementresult  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Mage::ElementresultRelationship  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Mage::Magedocumentation  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Mage::Mageml  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Mage::Protocol  [source]   [v 0.08100] Procedural notes on how data was prepared and processed.
Bio::Chado::Schema::Result::Mage::Protocolparam  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Mage::Quantification  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Mage::Quantificationprop  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Mage::QuantificationRelationship  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Mage::Study  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Mage::StudyAssay  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Mage::Studydesign  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Mage::Studydesignprop  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Mage::Studyfactor  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Mage::Studyfactorvalue  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Mage::Studyprop  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Mage::StudypropFeature  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Mage::Treatment  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Map::Featuremap  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Map::FeaturemapPub  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Map::Featurepos  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Map::Featurerange  [source]   [v 0.08100]
Bio::Chado::Schema::Result::NaturalDiversity::NdExperiment  [source]   [v 0.08100]
Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentContact  [source]   [v 0.08100]
Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentDbxref  [source]   [v 0.08100] Cross-reference experiment to accessions, images, etc
Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentGenotype  [source]   [v 0.08100]
Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentPhenotype  [source]   [v 0.08100]
Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentProject  [source]   [v 0.08100]
Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentprop  [source]   [v 0.08100]
Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentProtocol  [source]   [v 0.08100] Linking table: experiments to the protocols they involve.
Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentPub  [source]   [v 0.08100] Linking nd_experiment(s) to publication(s)
Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentStock  [source]   [v 0.08100]
Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentStockDbxref  [source]   [v 0.08100] Cross-reference experiment_stock to accessions, images, etc
Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentStockprop  [source]   [v 0.08100]
Bio::Chado::Schema::Result::NaturalDiversity::NdGeolocation  [source]   [v 0.08100]
Bio::Chado::Schema::Result::NaturalDiversity::NdGeolocationprop  [source]   [v 0.08100]
Bio::Chado::Schema::Result::NaturalDiversity::NdProtocol  [source]   [v 0.08100]
Bio::Chado::Schema::Result::NaturalDiversity::NdProtocolprop  [source]   [v 0.08100] Property/value associations for protocol.
Bio::Chado::Schema::Result::NaturalDiversity::NdProtocolReagent  [source]   [v 0.08100]
Bio::Chado::Schema::Result::NaturalDiversity::NdReagent  [source]   [v 0.08100]
Bio::Chado::Schema::Result::NaturalDiversity::NdReagentprop  [source]   [v 0.08100]
Bio::Chado::Schema::Result::NaturalDiversity::NdReagentRelationship  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Organism::Organism  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Organism::OrganismDbxref  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Organism::Organismprop  [source]   [v 0.08100] Tag-value properties - follows standard chado model.
Bio::Chado::Schema::Result::Phenotype::FeaturePhenotype  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Phenotype::Phenotype  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Phenotype::PhenotypeCvterm  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Phylogeny::Phylonode  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Phylogeny::PhylonodeDbxref  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Phylogeny::PhylonodeOrganism  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Phylogeny::Phylonodeprop  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Phylogeny::PhylonodePub  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Phylogeny::PhylonodeRelationship  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Phylogeny::Phylotree  [source]   [v 0.08100] Global anchor for phylogenetic tree.
Bio::Chado::Schema::Result::Phylogeny::PhylotreePub  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Project::Project  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Project::ProjectContact  [source]   [v 0.08100] Linking project(s) to contact(s)
Bio::Chado::Schema::Result::Project::Projectprop  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Project::ProjectPub  [source]   [v 0.08100] Linking project(s) to publication(s)
Bio::Chado::Schema::Result::Project::ProjectRelationship  [source]   [v 0.08100] A project can be composed of several smaller scale projects
Bio::Chado::Schema::Result::Pub::Pub  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Pub::Pubauthor  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Pub::PubDbxref  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Pub::Pubprop  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Pub::PubRelationship  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Sequence::Cvtermsynonym  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Sequence::Feature  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Sequence::FeatureCvterm  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Sequence::FeatureCvtermDbxref  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Sequence::FeatureCvtermprop  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Sequence::FeatureCvtermPub  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Sequence::FeatureDbxref  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Sequence::Featureloc  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Sequence::FeaturelocPub  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Sequence::Featureprop  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Sequence::FeaturepropPub  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Sequence::FeaturePub  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Sequence::FeaturePubprop  [source]   [v 0.08100] Property or attribute of a feature_pub link.
Bio::Chado::Schema::Result::Sequence::FeatureRelationship  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Sequence::FeatureRelationshipprop  [v 0.08100]
Bio::Chado::Schema::Result::Sequence::FeatureRelationshippropPub  [source]   [v 0.08100] Provenance for feature_relationshipprop.
Bio::Chado::Schema::Result::Sequence::FeatureRelationshipPub  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Sequence::FeatureSynonym  [source]   [v 0.08100] Linking table between feature and synonym.
Bio::Chado::Schema::Result::Sequence::IntronCombinedView  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Sequence::IntronlocView  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Sequence::ProteinCodingGene  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Sequence::Synonym  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Sequence::TypeFeatureCount  [source]   [v 0.08100] per-feature-type feature counts
Bio::Chado::Schema::Result::Stock::Stock  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Stock::Stockcollection  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Stock::Stockcollectionprop  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Stock::StockcollectionStock  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Stock::StockCvterm  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Stock::StockCvtermprop  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Stock::StockDbxref  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Stock::StockDbxrefprop  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Stock::StockGenotype  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Stock::Stockprop  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Stock::StockpropPub  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Stock::StockPub  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Stock::StockRelationship  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Stock::StockRelationshipCvterm  [source]   [v 0.08100]
Bio::Chado::Schema::Result::Stock::StockRelationshipPub  [source]   [v 0.08100]
Bio::Chado::Schema::Test  [source]   [v 0.08100] Library to be used by Bio::Chado::Schema test scripts.
Bio::Chado::Schema::Util  [source]   [v 0.08100] utility functions shared by Bio::Chado::Schema objects

Categories

Database Interfaces    >>     Bio
Miscellaneous Modules    >>     Bio

dslip information

Development Stage (Note: *NO IMPLIED TIMESCALES*) Beta testing
Support Level Mailing-list
Language Used Perl-only, no compiler needed, should be platform independent
Interface Style Object oriented using blessed references and/or inheritance
Public License Standard-Perl: user may choose between GPL and Artistic

Win32 PPM packages for "Bio-Chado-Schema"

ActiveState default Perl 5.10 repository   [  v 0.03100   ]
ActiveState default Perl 5.8 repository   [  v 0.03100   ]
trouchelle.com Perl 5.10 repository   [  v 0.04000   ]
trouchelle.com Perl 5.12 repository   [  v 0.04000   ]
trouchelle.com Perl 5.8 repository   [  v 0.03100   ]
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