Browse and search CPAN : Bio-Graphics

Distribution	Bio-Graphics [Download]
Author	LDS [ Lincoln D. Stein ]
Version	2.24
Abstract	Generate GD images of Bio::Seq objects
Released	27 May 2011
Size	840.1 KB
MD5 Checksum	d0da5080ba2c092c4f0d215696973208
Additional Files	README \| META \| Changes \| Makefile.PL \| Build.PL \|
Links	search.cpan.org \| CPAN::Forum \| AnnoCPAN \| rt.cpan.org \| Rating \| CPANTS \| CPAN testers \| Dependencies \| Testers matrix
Prerequisites	Bio::Root::Version \| GD \| Statistics::Descriptive \|

Modules

Bio::Graphics [source] [v 2.24]	Generate GD images of Bio::Seq objects
Bio::Graphics::ConfiguratorI [source]	A sectioned map of configuration
Bio::Graphics::DrawTransmembrane [source]	draw a cartoon of an Alpha-helical transmembrane protein.
Bio::Graphics::Feature [source]	A simple feature object for use with Bio::Graphics::Panel
Bio::Graphics::FeatureBase [source]	Compatibility module
Bio::Graphics::FeatureDir [source]	A directory of feature files and conf files
Bio::Graphics::FeatureFile [source]	A set of Bio::Graphics features, stored in a file
Bio::Graphics::FeatureFile::Iterator [source]	Iterator across a Bio::Graphics::FeatureFile
Bio::Graphics::Glyph [source]	Base class for Bio::Graphics::Glyph objects
Bio::Graphics::Glyph::alignment [source]	The "alignment" glyph
Bio::Graphics::Glyph::allele_tower [source]	The "allele_tower" glyph
Bio::Graphics::Glyph::anchored_arrow [source]	The "anchored_arrow" glyph
Bio::Graphics::Glyph::arrow [source]	the "arrow" glyph
Bio::Graphics::Glyph::box [source]	The "box" glyph
Bio::Graphics::Glyph::broken_line [source]	The "broken line" glyph
Bio::Graphics::Glyph::cds [source]	The "cds" glyph
Bio::Graphics::Glyph::christmas_arrow [source]	The "christmas arrow" glyph
Bio::Graphics::Glyph::cross [source]
Bio::Graphics::Glyph::crossbox [source]	The "crossbox" glyph
Bio::Graphics::Glyph::dashed_line [source]	The "dashed line" glyph
Bio::Graphics::Glyph::diamond [source]	The "diamond" glyph
Bio::Graphics::Glyph::dna [source]	The "dna" glyph
Bio::Graphics::Glyph::dot [source]	The "dot" glyph
Bio::Graphics::Glyph::dumbbell [source]	A glyph that draws a "dumbbell" with the same shapes on both ends.
Bio::Graphics::Glyph::ellipse [source]	The "ellipse" glyph
Bio::Graphics::Glyph::ex [source]	the "ex", or "crossed box" glyph
Bio::Graphics::Glyph::extending_arrow [source]	The "extending arrow" glyph
Bio::Graphics::Glyph::Factory [source]	Factory for Bio::Graphics::Glyph objects
Bio::Graphics::Glyph::fixedwidth [source]	A base class fixed width glyphs
Bio::Graphics::Glyph::flag [source]	the "flag" glyph
Bio::Graphics::Glyph::gene [source]	A GFF3-compatible gene glyph
Bio::Graphics::Glyph::generic [source]	The "generic" glyph
Bio::Graphics::Glyph::graded_segments [source]	The "graded_segments" glyph
Bio::Graphics::Glyph::group [source]	The "group" glyph
Bio::Graphics::Glyph::hat [source]	The "hat" glyph
Bio::Graphics::Glyph::heat_map [source]	The "heat_map" glyph
Bio::Graphics::Glyph::heat_map_ideogram [source]	The "heat_map_ideogram" glyph
Bio::Graphics::Glyph::heterogeneous_segments [source]	The "heterogeneous_segments" glyph
Bio::Graphics::Glyph::hidden [source]	The "hidden" glyph
Bio::Graphics::Glyph::hybrid_plot [source] [v 1.0]	An xyplot plot drawing dual graph using data from two wiggle files per track
Bio::Graphics::Glyph::ideogram [source]	The "ideogram" glyph
Bio::Graphics::Glyph::image [source]	A glyph that draws photographs & other images
Bio::Graphics::Glyph::lightning [source]	The "lightning" glyph
Bio::Graphics::Glyph::line [source]	The "line" glyph
Bio::Graphics::Glyph::merged_alignment [source]	The "merged_alignment" glyph
Bio::Graphics::Glyph::merge_parts [source]	a base class which suppors semantic zooming of scored alignment features
Bio::Graphics::Glyph::minmax [source]	The minmax glyph
Bio::Graphics::Glyph::operon [source]	The "polycistronic operon" glyph
Bio::Graphics::Glyph::oval [source]	The "oval" glyph
Bio::Graphics::Glyph::pairplot [source]	The "pairwise plot" glyph
Bio::Graphics::Glyph::pentagram [source]	The "pentagram" glyph
Bio::Graphics::Glyph::phylo_align [source]	The "phylogenetic alignment" glyph
Bio::Graphics::Glyph::pinsertion [source]	The "Drosophila P-element Insertion" glyph
Bio::Graphics::Glyph::primers [source]	The "STS primers" glyph
Bio::Graphics::Glyph::processed_transcript [source]	The sequence ontology transcript glyph
Bio::Graphics::Glyph::protein [source]	The "protein" glyph
Bio::Graphics::Glyph::ragged_ends [source]	The "ragged ends" glyph
Bio::Graphics::Glyph::rainbow_gene
Bio::Graphics::Glyph::read_pair [source]
Bio::Graphics::Glyph::redgreen_box [source]	The "redgreen_box" glyph
Bio::Graphics::Glyph::redgreen_segment [source]	The "redgreen_segments" glyph
Bio::Graphics::Glyph::repeating_shape [source]	A glyph that draws the same shape repeatedly.
Bio::Graphics::Glyph::rndrect [source]	The "round rect" glyph
Bio::Graphics::Glyph::ruler_arrow [source]	glyph for drawing an arrow as ruler (5' and 3' are marked as label)
Bio::Graphics::Glyph::saw_teeth [source]	The "saw teeth" glyph
Bio::Graphics::Glyph::segmented_keyglyph [source]	The "segmented_keyglyph" glyph
Bio::Graphics::Glyph::segments [source]	The "segments" glyph
Bio::Graphics::Glyph::smoothing [source]
Bio::Graphics::Glyph::so_transcript [source]	The sequence ontology transcript glyph
Bio::Graphics::Glyph::span [source]	The "span" glyph
Bio::Graphics::Glyph::spectrogram [source]	The "spectrogram" glyph
Bio::Graphics::Glyph::splice_site [source]	The "splice_site" glyph
Bio::Graphics::Glyph::stackedplot [source]	The stackedplot glyph
Bio::Graphics::Glyph::ternary_plot [source]	Draw ternary plot data
Bio::Graphics::Glyph::text_in_box [source]	The "text in box" glyph
Bio::Graphics::Glyph::three_letters [source]	DAS-compatible package to use for drawing a line of groups of three letters
Bio::Graphics::Glyph::tic_tac_toe [source]	The "tic-tac-toe" glyph
Bio::Graphics::Glyph::toomany [source]	The "too many to show" glyph
Bio::Graphics::Glyph::trace [source]	A glyph that visualizes a trace file
Bio::Graphics::Glyph::track [source]	The "track" glyph
Bio::Graphics::Glyph::transcript [source]	The "transcript" glyph
Bio::Graphics::Glyph::transcript2 [source]	The "transcript2" glyph
Bio::Graphics::Glyph::translation [source]	The "6-frame translation" glyph
Bio::Graphics::Glyph::triangle [source]	The "triangle" glyph
Bio::Graphics::Glyph::two_bolts [source]	The "two bolts" glyph
Bio::Graphics::Glyph::vista_plot [source] [v 1.0]	The "vista_plot" glyph
Bio::Graphics::Glyph::wave [source]	The "wave" glyph
Bio::Graphics::Glyph::weighted_arrow [source]	The "weighted arrow" glyph
Bio::Graphics::Glyph::whiskerplot [source]	The whiskerplot glyph
Bio::Graphics::Glyph::wiggle_box [source]	A generic box glyph compatible with dense "wig"data
Bio::Graphics::Glyph::wiggle_density [source]	A density plot compatible with dense "wig"data
Bio::Graphics::Glyph::wiggle_minmax [source]
Bio::Graphics::Glyph::wiggle_whiskers [source]
Bio::Graphics::Glyph::wiggle_xyplot [source]	An xyplot plot compatible with dense "wig"data
Bio::Graphics::Glyph::xyplot [source]	The xyplot glyph
Bio::Graphics::Layout [source]
Bio::Graphics::Panel [source]	Generate GD images of Bio::Seq objects
Bio::Graphics::Pictogram [source]	generate SVG output of Pictogram display for consensus motifs
Bio::Graphics::RendererI [source]	A renderer for the Bio::Graphics class that
Bio::Graphics::Util [source]	non-object-oriented utilities used in Bio::Graphics modules
Bio::Graphics::Wiggle [source] [v 1.0]	Binary storage for dense genomic features
Bio::Graphics::Wiggle::Loader [source]

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