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| Bio-Affymetrix
Modules to parse files produced by Affymetrix software |
Bio-AGP-LowLevel
low-level functions for working with Accessioned Golden Path (AGP) files |
Bio-ASN1-EntrezGene
Parser for NCBI Entrez Gene (ASN.1-format) |
| Bio-BigFile
Manipulate Jim Kent's BigWig and BigBed index files for genomic features. |
Bio-BLAST
low-level routines for working with BLAST tools and formats |
Bio-BMI
Body Mass Index calculate |
| Bio-Cellucidate
Perl library for cellucidate.com |
Bio-Chado-Schema
A standard DBIx::Class layer for the Chado database schema. |
Bio-Chaos
utility class for handling Chaos-XML |
| Bio-ConnectDots
Regular expression-based Perl Parser for NCBI Entrez Gene. |
Bio-Das
Client-side library for Distributed Genome Annotation System |
Bio-Das-Lite
Bio::Das::Lite is an implementation of the BioDas protocol, http://biodas.org/ |
| Bio-Das-ProServer
Bio::Das::ProServer is an implementation of the BioDAS protocol, http://biodas.org/ for the serving of biological data using XML over HTTP. Bio::Das::ProServer is designed as a lightweight alternative to some other DAS servers. Version 2.0 is a drop-in r |
Bio-DB-Das-BioSQL
DAS-style access to a BioSQL database |
Bio-DB-Das-Chado
DAS-style access to a chado database |
| Bio-DOOP-DOOP
DOOP API main module |
Bio-ECell
Perl interface for E-Cell Simulation Environment. |
Bio-Emboss
Write EMBOSS programs in Perl |
| Bio-FASTASequence
Perl extension for Bioinformatics. Parsing sequence informations. |
Bio-FASTASequence-File
Perl extension for Bio::FASTASequence |
Bio-FdrFet
Perl extension for False Discovery Rate and Fisher Exact Test applied to pathway analysis. |
| Bio-GenBankParser
Parse::RecDescent parser for a GenBank record |
Bio-Genex
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Bio-GFF3
fast, low-level GFF3 manipulation |
| Bio-Glite
Web service wrapper for G-language System. |
Bio-GMOD
Unified Generic Model Organism Database API |
Bio-GMOD-Blast-Graph
display a graphical summary of a BLAST report |
| Bio-GMOD-GenericGenePage
An abstract implementation of a Generic Gene Page XML, with 2 exmples |
Bio-Graphics
Generate GD images of Bio::Seq objects |
Bio-Grep
Perl extension for searching in DNA and Protein sequences |
| Bio-Homology-InterologWalk
Retrieve, score and visualize putative Protein-Protein Interactions through the orthology-walk method |
Bio-KEGGI
Module to handle KEGG genome, ko and pathway files |
Bio-LITE-Taxonomy
Lightweight and efficient taxonomic tree manager |
| Bio-LITE-Taxonomy-NCBI
Lightweight and efficient NCBI taxonomic manager |
Bio-LITE-Taxonomy-NCBI-Gi2taxid
Mappings of NCBI GIs to Taxids fast and with very low memory footprint. |
Bio-LITE-Taxonomy-RDP
Lightweight and efficient RDP taxonomic manager |
| Bio-MAGE
microarray gene expression (MAGE) API |
Bio-MAGE-Utils
Classes for MAGE-OM |
Bio-MAGETAB
A data model and utility API for the MAGE-TAB format. |
| Bio-Maxd
methods for uploading and retrieving data to/from a maxd (MySQL) database |
Bio-MCPrimers
Design molecular cloning PCR primers |
Bio-MedChunker
NP chunker for MEDLINE texts |
| Bio-Medpost
Part of speech tagger for MEDLINE text |
Bio-Metabolic
Perl extension for representing and simulating metabolic networks |
Bio-NEXUS
Bio::NEXUS - A NEXUS Application Programming Interface in Perl |
| Bio-NEXUS-Import
Extends Bio::NEXUS with parsers for file formats of popular phylogeny programs |
Bio-Oxbench
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Bio-Phylo
Analysis and manipulation of phylogenies. |
| Bio-PrimerDesigner
Design PCR primers using primer3 and epcr |
Bio-Prospect
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Bio-Protease
Digest your protein substrates with customizable specificity |
| Bio-SAGE-Comparison
Module to compare SAGE libraries. |
Bio-SAGE-DataProcessing
Module to process raw data generated from SAGE libraries. |
Bio-SamTools
Perl interface to SamTools library for DNA sequencing |
| Bio-SCF
Perl extension for reading and writting SCF sequence files |
Bio-SDRS
Perl extension for Sigmoidal Dose Response Search, a tool |
Bio-Tools-CodonOptTable
A more elaborative way to check the codons usage! |
| Bio-Tools-DNAGen
Generating a pool of DNA sequences |
Bio-Tools-Prepeat
Finding repeats in protein sequences |
Bio-Tools-Primer3Redux
BioPerl-based tools for Primer3 (redone) |
| Bio-Trace-ABIF
Perl extension for reading and parsing ABIF (Applied |
Bio-Translator
Translate DNA sequences |
Bio-Util-AA
Basic Amino Acid utilities |
| Bio-Util-DNA
Basic DNA utilities |
| Problems, suggestions, or comments to Randy Kobes. | Questions? Check the FAQ. | |
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