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| Distribution | BioPerl-Run [Download] |
| Author | CJFIELDS [ Christopher Fields ] |
| Version | 1.006900 |
| Abstract | BioPerl-Run - wrapper toolkit |
| Released | 21 Apr 2011 |
| Size | 13.9 MB |
| MD5 Checksum | c0ce55a64c1d7ab206c1b8f3d3ebd0aa |
| Additional Files | README | META | Changes | INSTALL | Build.PL | |
| Links | search.cpan.org | CPAN::Forum | AnnoCPAN | rt.cpan.org | Rating | CPANTS | CPAN testers | Dependencies | Testers matrix | Prerequisites | Bio::Root::Version | |
| Bio::DB::ESoap [source] | Client for the NCBI Entrez EUtilities SOAP server |
| Bio::DB::ESoap::WSDL [source] | WSDL parsing for Entrez SOAP EUtilities |
| Bio::DB::SoapEUtilities [source] | Interface to the NCBI Entrez web service *BETA* |
| Bio::DB::SoapEUtilities::DocSumAdaptor [source] | Handle for Entrez SOAP DocSums |
| Bio::DB::SoapEUtilities::FetchAdaptor [source] | Conversion of Entrez SOAP messages to BioPerl objects |
| Bio::DB::SoapEUtilities::FetchAdaptor::seq [source] | Fetch adaptor for 'seq' |
| Bio::DB::SoapEUtilities::FetchAdaptor::species [source] | Fetch adaptor for |
| Bio::DB::SoapEUtilities::GQueryAdaptor [source] | Handle for Entrez SOAP GlobalQuery items |
| Bio::DB::SoapEUtilities::LinkAdaptor [source] | Handle for Entrez SOAP LinkSets |
| Bio::DB::SoapEUtilities::Result [source] | Accessor object for SoapEUtilities results |
| Bio::Tools::Run::Alignment::Gmap [source] | Wrapper for running gmap. |
| Bio::Tools::Run::AssemblerBase [source] | base class for wrapping external assemblers |
| Bio::Tools::Run::BEDTools [source] | Run wrapper for the BEDTools suite of programs *BETA* |
| Bio::Tools::Run::BEDTools::Config [source] | Configuration data for bowtie commands |
| Bio::Tools::Run::BlastPlus [source] | A wrapper for NCBI's blast+ suite |
| Bio::Tools::Run::BlastPlus::Config [source] | |
| Bio::Tools::Run::Bowtie [source] | Run wrapper for the Bowtie short-read assembler *BETA* |
| Bio::Tools::Run::Bowtie::Config [source] | Configuration data for bowtie commands |
| Bio::Tools::Run::BWA [source] | Run wrapper for the BWA short-read assembler *BETA* |
| Bio::Tools::Run::BWA::Config [source] | Configuration data for BWA commands |
| Bio::Tools::Run::Maq [source] | Run wrapper for the Maq short-read assembler *BETA* |
| Bio::Tools::Run::Maq::Config [source] | Configuration data for maq commands |
| Bio::Tools::Run::Minimo [source] | Wrapper for local execution of the Minimo assembler |
| Bio::Tools::Run::Newbler [source] | Wrapper for local execution of Newbler |
| Bio::Tools::Run::Samtools [source] | a run wrapper for the samtools suite *BETA* |
| Bio::Tools::Run::Samtools::Config [source] | configurator for Bio::Tools::Run::Samtools |
| Bio::Tools::Run::StandAloneBlastPlus [source] | Compute with NCBI's blast+ suite *ALPHA* |
| No results found [ppm-request] |
| Problems, suggestions, or comments to Randy Kobes. | Questions? Check the FAQ. | |
| Enable installations using PAR::WebStart. |