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Distribution GO-TermFinder [Download]
Author SHERLOCK [ Gavin Sherlock ]
Version 0.86
Abstract identify GO nodes that annotate a group of genes with a significant p-value
Released 19 Nov 2009
Size 2.1 MB
MD5 Checksum d703bab2856f04de8b64efb8aaa49151
Additional Files README   |   META   |   Changes   |   Makefile.PL   |  
Links search.cpan.org   |   CPAN::Forum  |   AnnoCPAN  |   rt.cpan.org  |   Rating  | CPANTS  | CPAN testers | Dependencies | Testers matrix
Prerequisites CGI  |   GD  |   GraphViz  |   Storable  |   Test::More  |  

Modules

GO::AnnotatedGene  [source]   [v 0.11]
GO::Annotation  [source]   [v 0.11]
GO::AnnotationProvider  [source]   [v 0.12] abstract base class defining interface for how Annotation information should be provided
GO::AnnotationProvider::AnnotationParser  [source]   [v 0.15] parses a gene annotation file
GO::Node  [source]   [v 0.16] provides information about a node in the Gene Ontology
GO::OntologyProvider  [source]   [v 0.12] abstract base class providing API for the provision on Gene Ontology information
GO::OntologyProvider::OboParser  [source]   [v 0.01] Provides API for retrieving data from Gene Ontology obo file.
GO::OntologyProvider::OntologyParser  [source]   [v 0.15] Provides API for retrieving data from Gene Ontology files
GO::Reference  [source]   [v 0.1]
GO::TermFinder  [source]   [v 0.86] identify GO nodes that annotate a group of genes with a significant p-value
GO::TermFinder::Native [source]
GO::TermFinderReport::Html  [source]   [v 0.12] prints an html table of the results of GO::TermFinder
GO::TermFinderReport::Text  [source]   [v 0.1] prints results of GO::TermFinder as a text report
GO::Utils::File  [source]   [v 0.12] simply utility module for dealing with file parsing
GO::Utils::General  [source]   [v 0.11] provides some general utilities for clients of other GO classes
GO::View  [source]   [v 0.15] Creates a gif or png image for visualizing the GO DAG
GO::View::GD  [source]   [v 0.11] a helper class for GO::View to deal with the image

Categories

String Lang Text Proc    >>     GO
World Wide Web HTML HTTP CGI    >>     GO
Miscellaneous Modules    >>     GO

Win32 PPM packages for "GO-TermFinder"

ActiveState default Perl 5.6 repository   [  v 0.4   ]
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