Browse and search CPAN : Polloc

Distribution	Polloc [Download]
Author	LRR [ Luis M Rodríguez-R ]
Version	1.5.3b
Abstract	Polymorphic Loci analysis
Released	28 June 2011
Size	219.9 KB
MD5 Checksum	33ebd625d7a4171f1b3cedf05ce12a93
Additional Files	README \| META \| Makefile.PL \| Build.PL \|
Links	search.cpan.org \| CPAN::Forum \| AnnoCPAN \| rt.cpan.org \| Rating \| CPANTS \| CPAN testers \| Dependencies \| Testers matrix
Prerequisites	Bio::SeqIO \| Cwd \| Error \| File::Path \| File::Spec \| File::Temp \| List::Util \|

Modules

Bio::Polloc [source] [v 1.0503]	Molecular Biology/Polymorphic Loci analysis
Bio::Polloc::Genome [source] [v 1.0503]	A group of sequences from the same organism
Bio::Polloc::GroupCriteria [source] [v 1.0503]	Rules to group loci
Bio::Polloc::GroupCriteria::operator [source] [v 1.0503]	An acillary object for Bio::Polloc::GroupCriteria
Bio::Polloc::GroupCriteria::operator::bool [source] [v 1.0503]	A boolean operator
Bio::Polloc::GroupCriteria::operator::cons [source] [v 1.0503]	A constant
Bio::Polloc::GroupCriteria::operator::num [source] [v 1.0503]	A numeric operator
Bio::Polloc::GroupCriteria::operator::seq [source] [v 1.0503]	A sequence operator
Bio::Polloc::LociGroup [source] [v 1.0503]	A group of loci
Bio::Polloc::Locus::amplicon [source] [v 1.0503]	An amplification product
Bio::Polloc::Locus::composition [source] [v 1.0503]	A composition feature
Bio::Polloc::Locus::crispr [source] [v 1.0503]	A CRISPR locus
Bio::Polloc::Locus::extend [source] [v 1.0503]	A feature based on another one
Bio::Polloc::Locus::generic [source] [v 1.0503]	An unknown feature
Bio::Polloc::Locus::pattern [source] [v 1.0503]	A loci matching a pattern.
Bio::Polloc::Locus::repeat [source] [v 1.0503]	A repetitive locus
Bio::Polloc::LocusI [source] [v 1.0503]	Interface of C<Bio::Polloc::Locus::*> objects
Bio::Polloc::LocusIO [source] [v 1.0503]	I/O interface of C<Bio::Polloc::Locus::*> objects
Bio::Polloc::LocusIO::gff3 [source] [v 1.0503]	A LocusIO for Gff3
Bio::Polloc::Polloc::Config [source] [v 1.0503]	Handles .cfg files
Bio::Polloc::Polloc::Error [source] [v 1.0503]	Errors handler for the Bio::Polloc::* packages
Bio::Polloc::Polloc::IO [source] [v 1.0503]	I/O interface for the Bio::Polloc::* packages
Bio::Polloc::Polloc::Root [v 1.0503]
Bio::Polloc::Polloc::Version [source] [v 1.0503]	Provides central package-wide version
Bio::Polloc::Rule::boolean [source] [v 1.0503]	A rule of type boolean operator
Bio::Polloc::Rule::composition [source] [v 1.0503]	A rule of type composition
Bio::Polloc::Rule::crispr [source] [v 1.0503]	A rule of type CRISPR
Bio::Polloc::Rule::pattern [source] [v 1.0503]	A rule determined by a pattern
Bio::Polloc::Rule::profile [source] [v 1.0503]	A rule of type profile
Bio::Polloc::Rule::repeat [source] [v 1.0503]	A rule of type repeat
Bio::Polloc::Rule::tandemrepeat [source] [v 1.0503]	A rule of type tandemrepeat
Bio::Polloc::RuleI [source] [v 1.0503]	Generic rules interface
Bio::Polloc::RuleIO [source] [v 1.0503]	I/O interface for the sets of rules (L<Bio::Polloc::RuleI>)
Bio::Polloc::RuleSet::cfg [source] [v 1.0503]	Implementation of Bio::Polloc::RuleIO for .cfg files
Bio::Polloc::Typing::bandingPattern [source] [v 1.0503]	banding-pattern-based methods
Bio::Polloc::Typing::bandingPattern::amplification [source] [v 1.0503]	banding-pattern-based
Bio::Polloc::TypingI [source] [v 1.0503]	Generic typing interface
Bio::Polloc::TypingIO [source] [v 1.0503]	I/O interface for genotyping methods (L<Bio::Polloc::TypingI>)
Bio::Polloc::TypingIO::cfg [source] [v 1.0503]	Implementation of Bio::Polloc::TypingIO for .cfg files

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