Bio::Chado::Schema::General::Db - Bio::Chado::Schema::General::Db documentation

Bio-Chado-Schema documentation Contained in the Bio-Chado-Schema distribution.

Index

Code Index:

NAME

Top

Bio::Chado::Schema::General::Db

DESCRIPTION

Top

A database authority. Typical databases in bioinformatics are FlyBase, GO, UniProt, NCBI, MGI, etc. The authority is generally known by this shortened form, which is unique within the bioinformatics and biomedical realm. To Do - add support for URIs, URNs (e.g. LSIDs). We can do this by treating the URL as a URI - however, some applications may expect this to be resolvable - to be decided.

ACCESSORS

Top

db_id

  data_type: integer
  default_value: nextval('db_db_id_seq'::regclass)
  is_auto_increment: 1
  is_nullable: 0

name

  data_type: character varying
  default_value: undef
  is_nullable: 0
  size: 255

description

  data_type: character varying
  default_value: undef
  is_nullable: 1
  size: 255

urlprefix

  data_type: character varying
  default_value: undef
  is_nullable: 1
  size: 255

url

  data_type: character varying
  default_value: undef
  is_nullable: 1
  size: 255

RELATIONS

Top

dbxrefs

Type: has_many

Related object: Bio::Chado::Schema::General::Dbxref

Bio-Chado-Schema documentation Contained in the Bio-Chado-Schema distribution. 
package Bio::Chado::Schema::General::Db;

# Created by DBIx::Class::Schema::Loader
# DO NOT MODIFY THE FIRST PART OF THIS FILE

use strict;
use warnings;

use base 'DBIx::Class::Core';



__PACKAGE__->table("db");


__PACKAGE__->add_columns(
  "db_id",
  {
    data_type         => "integer",
    default_value     => \"nextval('db_db_id_seq'::regclass)",
    is_auto_increment => 1,
    is_nullable       => 0,
  },
  "name",
  {
    data_type => "character varying",
    default_value => undef,
    is_nullable => 0,
    size => 255,
  },
  "description",
  {
    data_type => "character varying",
    default_value => undef,
    is_nullable => 1,
    size => 255,
  },
  "urlprefix",
  {
    data_type => "character varying",
    default_value => undef,
    is_nullable => 1,
    size => 255,
  },
  "url",
  {
    data_type => "character varying",
    default_value => undef,
    is_nullable => 1,
    size => 255,
  },
);
__PACKAGE__->set_primary_key("db_id");
__PACKAGE__->add_unique_constraint("db_c1", ["name"]);


__PACKAGE__->has_many(
  "dbxrefs",
  "Bio::Chado::Schema::General::Dbxref",
  { "foreign.db_id" => "self.db_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);


# Created by DBIx::Class::Schema::Loader v0.05002 @ 2010-02-18 11:30:28
# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:tj2FuBUH4CL9utHJRbyl/Q


# You can replace this text with custom content, and it will be preserved on regeneration
1;