Bio::Chado::Schema::General::Dbxref - Bio::Chado::Schema::General::Dbxref documentation
Index
Code Index:
NAME
Bio::Chado::Schema::General::Dbxref
DESCRIPTION
A unique, global, public, stable identifier. Not necessarily an external reference - can reference data items inside the particular chado instance being used. Typically a row in a table can be uniquely identified with a primary identifier (called dbxref_id); a table may also have secondary identifiers (in a linking table <T>_dbxref). A dbxref is generally written as <DB>:<ACCESSION> or as <DB>:<ACCESSION>:<VERSION>.
ACCESSORS
dbxref_id
data_type: integer
default_value: nextval('dbxref_dbxref_id_seq'::regclass)
is_auto_increment: 1
is_nullable: 0
db_id
data_type: integer
default_value: undef
is_foreign_key: 1
is_nullable: 0
accession
data_type: character varying
default_value: undef
is_nullable: 0
size: 255
The local part of the identifier. Guaranteed by the db authority to be unique for that db.
version
data_type: character varying
default_value: (empty string)
is_nullable: 0
size: 255
description
data_type: text
default_value: undef
is_nullable: 1
RELATIONS
arraydesigns
assays
Type: has_many
Related object: Bio::Chado::Schema::Mage::Assay
biomaterials
biomaterial_dbxrefs
cell_line_dbxrefs
cvterm
Type: might_have
Related object: Bio::Chado::Schema::Cv::Cvterm
cvterm_dbxrefs
db
Type: belongs_to
Related object: Bio::Chado::Schema::General::Db
dbxrefprops
elements
features
feature_cvterm_dbxrefs
feature_dbxrefs
library_dbxrefs
organism_dbxrefs
phylonode_dbxrefs
phylotrees
protocols
pub_dbxrefs
stocks
stock_dbxrefs
studies
Type: has_many
Related object: Bio::Chado::Schema::Mage::Study
MANY-TO-MANY RELATIONSHIPS
biomaterials_mm
Relation to Bio::Chado::Schema::Mage::Biomaterial (i.e. biomaterial table)
via the organism_dbxrefs table.
cell_lines_mm
Relation to Bio::Chado::Schema::CellLine::CellLine (i.e. cell_line table)
via the cell_line_dbxrefs table.
cvterms_mm
Relation to Bio::Chado::Schema::Cv::Cvterm (i.e. cvterm table)
via the cvterm_dbxrefs table.
features_mm
Relation to Bio::Chado::Schema::Sequence::Feature (i.e. feature table)
via the feature_dbxrefs table.
libraries_mm
Relation to Bio::Chado::Schema::Library::LibraryDbxref (i.e. library table)
via the library_dbxrefs table.
organisms_mm
Relation to Bio::Chado::Schema::Organism::Organism (i.e. organism table)
via the organism_dbxrefs table.
phylonodes_mm
Relation to Bio::Chado::Schema::Phylogeny::Phylonode (i.e. phylonode table)
via the phylonode_dbxrefs table.
pubs_mm
Relation to Bio::Chado::Schema::Pub::Pub (i.e. pub table)
via the pub_dbxrefs table.
stocks_mm
Relation to Bio::Chado::Schema::Stock::Stock (i.e. stock table)
via the stock_dbxrefs table.
package Bio::Chado::Schema::General::Dbxref;
# Created by DBIx::Class::Schema::Loader
# DO NOT MODIFY THE FIRST PART OF THIS FILE
use strict;
use warnings;
use base 'DBIx::Class::Core';
__PACKAGE__->table("dbxref");
__PACKAGE__->add_columns(
"dbxref_id",
{
data_type => "integer",
default_value => \"nextval('dbxref_dbxref_id_seq'::regclass)",
is_auto_increment => 1,
is_nullable => 0,
},
"db_id",
{
data_type => "integer",
default_value => undef,
is_foreign_key => 1,
is_nullable => 0,
},
"accession",
{
data_type => "character varying",
default_value => undef,
is_nullable => 0,
size => 255,
},
"version",
{
data_type => "character varying",
default_value => "",
is_nullable => 0,
size => 255,
},
"description",
{ data_type => "text", default_value => undef, is_nullable => 1 },
);
__PACKAGE__->set_primary_key("dbxref_id");
__PACKAGE__->add_unique_constraint("dbxref_c1", ["db_id", "accession", "version"]);
__PACKAGE__->has_many(
"arraydesigns",
"Bio::Chado::Schema::Mage::Arraydesign",
{ "foreign.dbxref_id" => "self.dbxref_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
__PACKAGE__->has_many(
"assays",
"Bio::Chado::Schema::Mage::Assay",
{ "foreign.dbxref_id" => "self.dbxref_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
__PACKAGE__->has_many(
"biomaterials",
"Bio::Chado::Schema::Mage::Biomaterial",
{ "foreign.dbxref_id" => "self.dbxref_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
__PACKAGE__->has_many(
"biomaterial_dbxrefs",
"Bio::Chado::Schema::Mage::BiomaterialDbxref",
{ "foreign.dbxref_id" => "self.dbxref_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
__PACKAGE__->has_many(
"cell_line_dbxrefs",
"Bio::Chado::Schema::CellLine::CellLineDbxref",
{ "foreign.dbxref_id" => "self.dbxref_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
__PACKAGE__->might_have(
"cvterm",
"Bio::Chado::Schema::Cv::Cvterm",
{ "foreign.dbxref_id" => "self.dbxref_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
__PACKAGE__->has_many(
"cvterm_dbxrefs",
"Bio::Chado::Schema::Cv::CvtermDbxref",
{ "foreign.dbxref_id" => "self.dbxref_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
__PACKAGE__->belongs_to(
"db",
"Bio::Chado::Schema::General::Db",
{ db_id => "db_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
__PACKAGE__->has_many(
"dbxrefprops",
"Bio::Chado::Schema::Cv::Dbxrefprop",
{ "foreign.dbxref_id" => "self.dbxref_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
__PACKAGE__->has_many(
"elements",
"Bio::Chado::Schema::Mage::Element",
{ "foreign.dbxref_id" => "self.dbxref_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
__PACKAGE__->has_many(
"features",
"Bio::Chado::Schema::Sequence::Feature",
{ "foreign.dbxref_id" => "self.dbxref_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
__PACKAGE__->has_many(
"feature_cvterm_dbxrefs",
"Bio::Chado::Schema::Sequence::FeatureCvtermDbxref",
{ "foreign.dbxref_id" => "self.dbxref_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
__PACKAGE__->has_many(
"feature_dbxrefs",
"Bio::Chado::Schema::Sequence::FeatureDbxref",
{ "foreign.dbxref_id" => "self.dbxref_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
__PACKAGE__->has_many(
"library_dbxrefs",
"Bio::Chado::Schema::Library::LibraryDbxref",
{ "foreign.dbxref_id" => "self.dbxref_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
__PACKAGE__->has_many(
"organism_dbxrefs",
"Bio::Chado::Schema::Organism::OrganismDbxref",
{ "foreign.dbxref_id" => "self.dbxref_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
__PACKAGE__->has_many(
"phylonode_dbxrefs",
"Bio::Chado::Schema::Phylogeny::PhylonodeDbxref",
{ "foreign.dbxref_id" => "self.dbxref_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
__PACKAGE__->has_many(
"phylotrees",
"Bio::Chado::Schema::Phylogeny::Phylotree",
{ "foreign.dbxref_id" => "self.dbxref_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
__PACKAGE__->has_many(
"protocols",
"Bio::Chado::Schema::Mage::Protocol",
{ "foreign.dbxref_id" => "self.dbxref_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
__PACKAGE__->has_many(
"pub_dbxrefs",
"Bio::Chado::Schema::Pub::PubDbxref",
{ "foreign.dbxref_id" => "self.dbxref_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
__PACKAGE__->has_many(
"stocks",
"Bio::Chado::Schema::Stock::Stock",
{ "foreign.dbxref_id" => "self.dbxref_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
__PACKAGE__->has_many(
"stock_dbxrefs",
"Bio::Chado::Schema::Stock::StockDbxref",
{ "foreign.dbxref_id" => "self.dbxref_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
__PACKAGE__->has_many(
"studies",
"Bio::Chado::Schema::Mage::Study",
{ "foreign.dbxref_id" => "self.dbxref_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
# Created by DBIx::Class::Schema::Loader v0.05002 @ 2010-02-18 11:30:28
# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:G0B4CSfFmiZA3aBDkWyb4g
__PACKAGE__->many_to_many
(
'biomaterials_mm',
'biomaterial_dbxrefs' => 'biomaterial',
);
__PACKAGE__->many_to_many
(
'cell_lines_mm',
'cell_line_dbxrefs' => 'cell_line',
);
__PACKAGE__->many_to_many
(
'cvterms_mm',
'cvterm_dbxrefs' => 'cvterm',
);
__PACKAGE__->many_to_many
(
'features_mm',
'feature_dbxrefs' => 'feature',
);
__PACKAGE__->many_to_many
(
'libraries_mm',
'library_dbxrefs' => 'library',
);
__PACKAGE__->many_to_many
(
'organisms_mm',
'organism_dbxrefs' => 'organism',
);
__PACKAGE__->many_to_many
(
'phylonodes_mm',
'phylonode_dbxrefs' => 'phylonode',
);
__PACKAGE__->many_to_many
(
'pubs_mm',
'pub_dbxrefs' => 'pub',
);
__PACKAGE__->many_to_many
(
'stocks_mm',
'stock_dbxrefs' => 'stock',
);
# You can replace this text with custom content, and it will be preserved on regeneration
1;