Bio::Chado::Schema::Result::Companalysis::Analysis - Bio::Chado::Schema::Result::Companalysis::Analysis documentation

Bio-Chado-Schema documentation Contained in the Bio-Chado-Schema distribution.

Index

Code Index:

NAME

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Bio::Chado::Schema::Result::Companalysis::Analysis

DESCRIPTION

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An analysis is a particular type of a computational analysis; it may be a blast of one sequence against another, or an all by all blast, or a different kind of analysis altogether. It is a single unit of computation.

NAME

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Bio::Chado::Schema::Result::Companalysis::Analysis

ACCESSORS

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analysis_id

  data_type: 'integer'
  is_auto_increment: 1
  is_nullable: 0
  sequence: 'analysis_analysis_id_seq'

name

  data_type: 'varchar'
  is_nullable: 1
  size: 255

A way of grouping analyses. This should be a handy short identifier that can help people find an analysis they want. For instance "tRNAscan", "cDNA", "FlyPep", "SwissProt", and it should not be assumed to be unique. For instance, there may be lots of separate analyses done against a cDNA database.

description

  data_type: 'text'
  is_nullable: 1

program

  data_type: 'varchar'
  is_nullable: 0
  size: 255

Program name, e.g. blastx, blastp, sim4, genscan.

programversion

  data_type: 'varchar'
  is_nullable: 0
  size: 255

Version description, e.g. TBLASTX 2.0MP-WashU [09-Nov-2000].

algorithm

  data_type: 'varchar'
  is_nullable: 1
  size: 255

Algorithm name, e.g. blast.

sourcename

  data_type: 'varchar'
  is_nullable: 1
  size: 255

Source name, e.g. cDNA, SwissProt.

sourceversion

  data_type: 'varchar'
  is_nullable: 1
  size: 255

sourceuri

  data_type: 'text'
  is_nullable: 1

This is an optional, permanent URL or URI for the source of the analysis. The idea is that someone could recreate the analysis directly by going to this URI and fetching the source data (e.g. the blast database, or the training model).

timeexecuted

  data_type: 'timestamp'
  default_value: current_timestamp
  is_nullable: 0
  original: {default_value => \"now()"}

RELATIONS

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analysisfeatures

Type: has_many

Related object: Bio::Chado::Schema::Result::Companalysis::Analysisfeature

analysisprops

Type: has_many

Related object: Bio::Chado::Schema::Result::Companalysis::Analysisprop

phylotrees

Type: has_many

Related object: Bio::Chado::Schema::Result::Phylogeny::Phylotree

quantifications

Type: has_many

Related object: Bio::Chado::Schema::Result::Mage::Quantification

AUTHOR

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Robert Buels <rbuels@cpan.org>

COPYRIGHT AND LICENSE

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This software is copyright (c) 2011 by Robert Buels.

This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.

Bio-Chado-Schema documentation Contained in the Bio-Chado-Schema distribution. 
package Bio::Chado::Schema::Result::Companalysis::Analysis;
BEGIN {
  $Bio::Chado::Schema::Result::Companalysis::Analysis::AUTHORITY = 'cpan:RBUELS';
}
BEGIN {
  $Bio::Chado::Schema::Result::Companalysis::Analysis::VERSION = '0.08100';
}

# Created by DBIx::Class::Schema::Loader
# DO NOT MODIFY THE FIRST PART OF THIS FILE

use strict;
use warnings;

use base 'DBIx::Class::Core';



__PACKAGE__->table("analysis");


__PACKAGE__->add_columns(
  "analysis_id",
  {
    data_type         => "integer",
    is_auto_increment => 1,
    is_nullable       => 0,
    sequence          => "analysis_analysis_id_seq",
  },
  "name",
  { data_type => "varchar", is_nullable => 1, size => 255 },
  "description",
  { data_type => "text", is_nullable => 1 },
  "program",
  { data_type => "varchar", is_nullable => 0, size => 255 },
  "programversion",
  { data_type => "varchar", is_nullable => 0, size => 255 },
  "algorithm",
  { data_type => "varchar", is_nullable => 1, size => 255 },
  "sourcename",
  { data_type => "varchar", is_nullable => 1, size => 255 },
  "sourceversion",
  { data_type => "varchar", is_nullable => 1, size => 255 },
  "sourceuri",
  { data_type => "text", is_nullable => 1 },
  "timeexecuted",
  {
    data_type     => "timestamp",
    default_value => \"current_timestamp",
    is_nullable   => 0,
    original      => { default_value => \"now()" },
  },
);
__PACKAGE__->set_primary_key("analysis_id");
__PACKAGE__->add_unique_constraint("analysis_c1", ["program", "programversion", "sourcename"]);


__PACKAGE__->has_many(
  "analysisfeatures",
  "Bio::Chado::Schema::Result::Companalysis::Analysisfeature",
  { "foreign.analysis_id" => "self.analysis_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);


__PACKAGE__->has_many(
  "analysisprops",
  "Bio::Chado::Schema::Result::Companalysis::Analysisprop",
  { "foreign.analysis_id" => "self.analysis_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);


__PACKAGE__->has_many(
  "phylotrees",
  "Bio::Chado::Schema::Result::Phylogeny::Phylotree",
  { "foreign.analysis_id" => "self.analysis_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);


__PACKAGE__->has_many(
  "quantifications",
  "Bio::Chado::Schema::Result::Mage::Quantification",
  { "foreign.analysis_id" => "self.analysis_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);


# Created by DBIx::Class::Schema::Loader v0.07010 @ 2011-03-16 23:09:58
# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:XYC5XhRez+x6ytnUB7nVOw


# You can replace this text with custom content, and it will be preserved on regeneration
1;

__END__