Bio::Chado::Schema::Result::Cv::StatsPathsToRoot - Bio::Chado::Schema::Result::Cv::StatsPathsToRoot documentation

Bio-Chado-Schema documentation Contained in the Bio-Chado-Schema distribution.

Index

Code Index:

NAME

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Bio::Chado::Schema::Result::Cv::StatsPathsToRoot

DESCRIPTION

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per-cvterm statistics on its placement in the DAG relative to the root. There may be multiple paths from any term to the root. This gives the total number of paths, and the average minimum and maximum distances. Here distance is defined by cvtermpath.pathdistance

NAME

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Bio::Chado::Schema::Result::Cv::StatsPathsToRoot

ACCESSORS

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cvterm_id

  data_type: 'integer'
  is_nullable: 1

total_paths

  data_type: 'bigint'
  is_nullable: 1

avg_distance

  data_type: 'numeric'
  is_nullable: 1

min_distance

  data_type: 'integer'
  is_nullable: 1

max_distance

  data_type: 'integer'
  is_nullable: 1

AUTHOR

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Robert Buels <rbuels@cpan.org>

COPYRIGHT AND LICENSE

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This software is copyright (c) 2011 by Robert Buels.

This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.

Bio-Chado-Schema documentation Contained in the Bio-Chado-Schema distribution. 
package Bio::Chado::Schema::Result::Cv::StatsPathsToRoot;
BEGIN {
  $Bio::Chado::Schema::Result::Cv::StatsPathsToRoot::AUTHORITY = 'cpan:RBUELS';
}
BEGIN {
  $Bio::Chado::Schema::Result::Cv::StatsPathsToRoot::VERSION = '0.08100';
}

# Created by DBIx::Class::Schema::Loader
# DO NOT MODIFY THE FIRST PART OF THIS FILE

use strict;
use warnings;

use base 'DBIx::Class::Core';



__PACKAGE__->table("stats_paths_to_root");


__PACKAGE__->add_columns(
  "cvterm_id",
  { data_type => "integer", is_nullable => 1 },
  "total_paths",
  { data_type => "bigint", is_nullable => 1 },
  "avg_distance",
  { data_type => "numeric", is_nullable => 1 },
  "min_distance",
  { data_type => "integer", is_nullable => 1 },
  "max_distance",
  { data_type => "integer", is_nullable => 1 },
);


# Created by DBIx::Class::Schema::Loader v0.07010 @ 2011-03-16 23:09:59
# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:fSYGZt0z2S/O8jRP/WecZQ


# You can replace this text with custom content, and it will be preserved on regeneration
1;

__END__