Bio::Chado::Schema::Result::Genetic::FeatureGenotype - Bio::Chado::Schema::Result::Genetic::FeatureGenotype documentation
Index
Code Index:
NAME
Bio::Chado::Schema::Result::Genetic::FeatureGenotype
NAME
Bio::Chado::Schema::Result::Genetic::FeatureGenotype
ACCESSORS
feature_genotype_id
data_type: 'integer'
is_auto_increment: 1
is_nullable: 0
sequence: 'feature_genotype_feature_genotype_id_seq'
feature_id
data_type: 'integer'
is_foreign_key: 1
is_nullable: 0
genotype_id
data_type: 'integer'
is_foreign_key: 1
is_nullable: 0
chromosome_id
data_type: 'integer'
is_foreign_key: 1
is_nullable: 1
A feature of SO type "chromosome".
rank
data_type: 'integer'
is_nullable: 0
rank can be used for
n-ploid organisms or to preserve order.
cgroup
data_type: 'integer'
is_nullable: 0
Spatially distinguishable
group. group can be used for distinguishing the chromosomal groups,
for example (RNAi products and so on can be treated as different
groups, as they do not fall on a particular chromosome).
cvterm_id
data_type: 'integer'
is_foreign_key: 1
is_nullable: 0
RELATIONS
cvterm
genotype
feature
chromosome
AUTHOR
Robert Buels <rbuels@cpan.org>
COPYRIGHT AND LICENSE
This software is copyright (c) 2011 by Robert Buels.
This is free software; you can redistribute it and/or modify it under
the same terms as the Perl 5 programming language system itself.
package Bio::Chado::Schema::Result::Genetic::FeatureGenotype;
BEGIN {
$Bio::Chado::Schema::Result::Genetic::FeatureGenotype::AUTHORITY = 'cpan:RBUELS';
}
BEGIN {
$Bio::Chado::Schema::Result::Genetic::FeatureGenotype::VERSION = '0.08100';
}
# Created by DBIx::Class::Schema::Loader
# DO NOT MODIFY THE FIRST PART OF THIS FILE
use strict;
use warnings;
use base 'DBIx::Class::Core';
__PACKAGE__->table("feature_genotype");
__PACKAGE__->add_columns(
"feature_genotype_id",
{
data_type => "integer",
is_auto_increment => 1,
is_nullable => 0,
sequence => "feature_genotype_feature_genotype_id_seq",
},
"feature_id",
{ data_type => "integer", is_foreign_key => 1, is_nullable => 0 },
"genotype_id",
{ data_type => "integer", is_foreign_key => 1, is_nullable => 0 },
"chromosome_id",
{ data_type => "integer", is_foreign_key => 1, is_nullable => 1 },
"rank",
{ data_type => "integer", is_nullable => 0 },
"cgroup",
{ data_type => "integer", is_nullable => 0 },
"cvterm_id",
{ data_type => "integer", is_foreign_key => 1, is_nullable => 0 },
);
__PACKAGE__->set_primary_key("feature_genotype_id");
__PACKAGE__->add_unique_constraint(
"feature_genotype_c1",
[
"feature_id",
"genotype_id",
"cvterm_id",
"chromosome_id",
"rank",
"cgroup",
],
);
__PACKAGE__->belongs_to(
"cvterm",
"Bio::Chado::Schema::Result::Cv::Cvterm",
{ cvterm_id => "cvterm_id" },
{
cascade_copy => 0,
cascade_delete => 0,
is_deferrable => 1,
on_delete => "CASCADE",
on_update => "CASCADE",
},
);
__PACKAGE__->belongs_to(
"genotype",
"Bio::Chado::Schema::Result::Genetic::Genotype",
{ genotype_id => "genotype_id" },
{
cascade_copy => 0,
cascade_delete => 0,
is_deferrable => 1,
on_delete => "CASCADE",
on_update => "CASCADE",
},
);
__PACKAGE__->belongs_to(
"feature",
"Bio::Chado::Schema::Result::Sequence::Feature",
{ feature_id => "feature_id" },
{
cascade_copy => 0,
cascade_delete => 0,
is_deferrable => 1,
on_delete => "CASCADE",
on_update => "CASCADE",
},
);
__PACKAGE__->belongs_to(
"chromosome",
"Bio::Chado::Schema::Result::Sequence::Feature",
{ feature_id => "chromosome_id" },
{
cascade_copy => 0,
cascade_delete => 0,
is_deferrable => 1,
join_type => "LEFT",
on_delete => "CASCADE",
on_update => "CASCADE",
},
);
# Created by DBIx::Class::Schema::Loader v0.07010 @ 2011-03-16 23:09:58
# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:gmrMMxo1beaPJKMPPovAmg
# You can replace this text with custom content, and it will be preserved on regeneration
1;
__END__