Bio::Chado::Schema::Result::Mage::Biomaterial - Bio::Chado::Schema::Result::Mage::Biomaterial documentation
Index
Code Index:
NAME
Bio::Chado::Schema::Result::Mage::Biomaterial
DESCRIPTION
A biomaterial represents the MAGE concept of BioSource, BioSample, and LabeledExtract. It is essentially some biological material (tissue, cells, serum) that may have been processed. Processed biomaterials should be traceable back to raw biomaterials via the biomaterialrelationship table.
NAME
Bio::Chado::Schema::Result::Mage::Biomaterial
ACCESSORS
biomaterial_id
data_type: 'integer'
is_auto_increment: 1
is_nullable: 0
sequence: 'biomaterial_biomaterial_id_seq'
taxon_id
data_type: 'integer'
is_foreign_key: 1
is_nullable: 1
biosourceprovider_id
data_type: 'integer'
is_foreign_key: 1
is_nullable: 1
dbxref_id
data_type: 'integer'
is_foreign_key: 1
is_nullable: 1
name
data_type: 'text'
is_nullable: 1
description
data_type: 'text'
is_nullable: 1
RELATIONS
assay_biomaterials
taxon
dbxref
biosourceprovider
biomaterial_dbxrefs
biomaterialprops
biomaterial_relationship_subjects
biomaterial_relationship_objects
biomaterial_treatments
treatments
AUTHOR
Robert Buels <rbuels@cpan.org>
COPYRIGHT AND LICENSE
This software is copyright (c) 2011 by Robert Buels.
This is free software; you can redistribute it and/or modify it under
the same terms as the Perl 5 programming language system itself.
package Bio::Chado::Schema::Result::Mage::Biomaterial;
BEGIN {
$Bio::Chado::Schema::Result::Mage::Biomaterial::AUTHORITY = 'cpan:RBUELS';
}
BEGIN {
$Bio::Chado::Schema::Result::Mage::Biomaterial::VERSION = '0.08100';
}
# Created by DBIx::Class::Schema::Loader
# DO NOT MODIFY THE FIRST PART OF THIS FILE
use strict;
use warnings;
use base 'DBIx::Class::Core';
__PACKAGE__->table("biomaterial");
__PACKAGE__->add_columns(
"biomaterial_id",
{
data_type => "integer",
is_auto_increment => 1,
is_nullable => 0,
sequence => "biomaterial_biomaterial_id_seq",
},
"taxon_id",
{ data_type => "integer", is_foreign_key => 1, is_nullable => 1 },
"biosourceprovider_id",
{ data_type => "integer", is_foreign_key => 1, is_nullable => 1 },
"dbxref_id",
{ data_type => "integer", is_foreign_key => 1, is_nullable => 1 },
"name",
{ data_type => "text", is_nullable => 1 },
"description",
{ data_type => "text", is_nullable => 1 },
);
__PACKAGE__->set_primary_key("biomaterial_id");
__PACKAGE__->add_unique_constraint("biomaterial_c1", ["name"]);
__PACKAGE__->has_many(
"assay_biomaterials",
"Bio::Chado::Schema::Result::Mage::AssayBiomaterial",
{ "foreign.biomaterial_id" => "self.biomaterial_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
__PACKAGE__->belongs_to(
"taxon",
"Bio::Chado::Schema::Result::Organism::Organism",
{ organism_id => "taxon_id" },
{
cascade_copy => 0,
cascade_delete => 0,
is_deferrable => 1,
join_type => "LEFT",
on_delete => "CASCADE",
on_update => "CASCADE",
},
);
__PACKAGE__->belongs_to(
"dbxref",
"Bio::Chado::Schema::Result::General::Dbxref",
{ dbxref_id => "dbxref_id" },
{
cascade_copy => 0,
cascade_delete => 0,
is_deferrable => 1,
join_type => "LEFT",
on_delete => "CASCADE",
on_update => "CASCADE",
},
);
__PACKAGE__->belongs_to(
"biosourceprovider",
"Bio::Chado::Schema::Result::Contact::Contact",
{ contact_id => "biosourceprovider_id" },
{
cascade_copy => 0,
cascade_delete => 0,
is_deferrable => 1,
join_type => "LEFT",
on_delete => "CASCADE",
on_update => "CASCADE",
},
);
__PACKAGE__->has_many(
"biomaterial_dbxrefs",
"Bio::Chado::Schema::Result::Mage::BiomaterialDbxref",
{ "foreign.biomaterial_id" => "self.biomaterial_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
__PACKAGE__->has_many(
"biomaterialprops",
"Bio::Chado::Schema::Result::Mage::Biomaterialprop",
{ "foreign.biomaterial_id" => "self.biomaterial_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
__PACKAGE__->has_many(
"biomaterial_relationship_subjects",
"Bio::Chado::Schema::Result::Mage::BiomaterialRelationship",
{ "foreign.subject_id" => "self.biomaterial_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
__PACKAGE__->has_many(
"biomaterial_relationship_objects",
"Bio::Chado::Schema::Result::Mage::BiomaterialRelationship",
{ "foreign.object_id" => "self.biomaterial_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
__PACKAGE__->has_many(
"biomaterial_treatments",
"Bio::Chado::Schema::Result::Mage::BiomaterialTreatment",
{ "foreign.biomaterial_id" => "self.biomaterial_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
__PACKAGE__->has_many(
"treatments",
"Bio::Chado::Schema::Result::Mage::Treatment",
{ "foreign.biomaterial_id" => "self.biomaterial_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
# Created by DBIx::Class::Schema::Loader v0.07010 @ 2011-03-16 23:09:58
# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:/VQ8SGvWjdco22wrum1JHg
# You can replace this text with custom content, and it will be preserved on regeneration
1;
__END__