Index
NAME
Bio::Chado::Schema::Result::Phenotype::Phenotype
DESCRIPTION
A phenotypic statement, or a single atomic phenotypic observation, is a controlled sentence describing observable effects of non-wild type function. E.g. Obs=eye, attribute=color, cvalue=red.
NAME
Bio::Chado::Schema::Result::Phenotype::Phenotype
ACCESSORS
phenotype_id
data_type: 'integer' is_auto_increment: 1 is_nullable: 0 sequence: 'phenotype_phenotype_id_seq'
uniquename
data_type: 'text' is_nullable: 0
observable_id
data_type: 'integer' is_foreign_key: 1 is_nullable: 1
The entity: e.g. anatomy_part, biological_process.
attr_id
data_type: 'integer' is_foreign_key: 1 is_nullable: 1
Phenotypic attribute (quality, property, attribute, character) - drawn from PATO.
value
data_type: 'text' is_nullable: 1
Value of attribute - unconstrained free text. Used only if cvalue_id is not appropriate.
cvalue_id
data_type: 'integer' is_foreign_key: 1 is_nullable: 1
Phenotype attribute value (state).
assay_id
data_type: 'integer' is_foreign_key: 1 is_nullable: 1
Evidence type.
RELATIONS
feature_phenotypes
Type: has_many
Related object: Bio::Chado::Schema::Result::Phenotype::FeaturePhenotype
nd_experiment_phenotypes
Type: has_many
Related object: Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentPhenotype
assay
Type: belongs_to
Related object: Bio::Chado::Schema::Result::Cv::Cvterm
attr
Type: belongs_to
Related object: Bio::Chado::Schema::Result::Cv::Cvterm
observable
Type: belongs_to
Related object: Bio::Chado::Schema::Result::Cv::Cvterm
cvalue
Type: belongs_to
Related object: Bio::Chado::Schema::Result::Cv::Cvterm
phenotype_comparison_phenotype1s
Type: has_many
Related object: Bio::Chado::Schema::Result::Genetic::PhenotypeComparison
phenotype_comparison_phenotype2s
Type: has_many
Related object: Bio::Chado::Schema::Result::Genetic::PhenotypeComparison
phenotype_cvterms
Type: has_many
Related object: Bio::Chado::Schema::Result::Phenotype::PhenotypeCvterm
phenstatements
Type: has_many
Related object: Bio::Chado::Schema::Result::Genetic::Phenstatement
AUTHOR
Robert Buels <rbuels@cpan.org>
COPYRIGHT AND LICENSE
This software is copyright (c) 2011 by Robert Buels.
This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.