Bio::Chado::Schema::Result::Phenotype::Phenotype - Bio::Chado::Schema::Result::Phenotype::Phenotype documentation
Index
Code Index:
NAME
Bio::Chado::Schema::Result::Phenotype::Phenotype
DESCRIPTION
A phenotypic statement, or a single
atomic phenotypic observation, is a controlled sentence describing
observable effects of non-wild type function. E.g. Obs=eye, attribute=color, cvalue=red.
NAME
Bio::Chado::Schema::Result::Phenotype::Phenotype
ACCESSORS
phenotype_id
data_type: 'integer'
is_auto_increment: 1
is_nullable: 0
sequence: 'phenotype_phenotype_id_seq'
uniquename
data_type: 'text'
is_nullable: 0
observable_id
data_type: 'integer'
is_foreign_key: 1
is_nullable: 1
The entity: e.g. anatomy_part, biological_process.
attr_id
data_type: 'integer'
is_foreign_key: 1
is_nullable: 1
Phenotypic attribute (quality, property, attribute, character) - drawn from PATO.
value
data_type: 'text'
is_nullable: 1
Value of attribute - unconstrained free text. Used only if cvalue_id is not appropriate.
cvalue_id
data_type: 'integer'
is_foreign_key: 1
is_nullable: 1
Phenotype attribute value (state).
assay_id
data_type: 'integer'
is_foreign_key: 1
is_nullable: 1
Evidence type.
RELATIONS
feature_phenotypes
nd_experiment_phenotypes
assay
attr
observable
cvalue
phenotype_comparison_phenotype1s
phenotype_comparison_phenotype2s
phenotype_cvterms
phenstatements
AUTHOR
Robert Buels <rbuels@cpan.org>
COPYRIGHT AND LICENSE
This software is copyright (c) 2011 by Robert Buels.
This is free software; you can redistribute it and/or modify it under
the same terms as the Perl 5 programming language system itself.
package Bio::Chado::Schema::Result::Phenotype::Phenotype;
BEGIN {
$Bio::Chado::Schema::Result::Phenotype::Phenotype::AUTHORITY = 'cpan:RBUELS';
}
BEGIN {
$Bio::Chado::Schema::Result::Phenotype::Phenotype::VERSION = '0.08100';
}
# Created by DBIx::Class::Schema::Loader
# DO NOT MODIFY THE FIRST PART OF THIS FILE
use strict;
use warnings;
use base 'DBIx::Class::Core';
__PACKAGE__->table("phenotype");
__PACKAGE__->add_columns(
"phenotype_id",
{
data_type => "integer",
is_auto_increment => 1,
is_nullable => 0,
sequence => "phenotype_phenotype_id_seq",
},
"uniquename",
{ data_type => "text", is_nullable => 0 },
"observable_id",
{ data_type => "integer", is_foreign_key => 1, is_nullable => 1 },
"attr_id",
{ data_type => "integer", is_foreign_key => 1, is_nullable => 1 },
"value",
{ data_type => "text", is_nullable => 1 },
"cvalue_id",
{ data_type => "integer", is_foreign_key => 1, is_nullable => 1 },
"assay_id",
{ data_type => "integer", is_foreign_key => 1, is_nullable => 1 },
);
__PACKAGE__->set_primary_key("phenotype_id");
__PACKAGE__->add_unique_constraint("phenotype_c1", ["uniquename"]);
__PACKAGE__->has_many(
"feature_phenotypes",
"Bio::Chado::Schema::Result::Phenotype::FeaturePhenotype",
{ "foreign.phenotype_id" => "self.phenotype_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
__PACKAGE__->has_many(
"nd_experiment_phenotypes",
"Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentPhenotype",
{ "foreign.phenotype_id" => "self.phenotype_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
__PACKAGE__->belongs_to(
"assay",
"Bio::Chado::Schema::Result::Cv::Cvterm",
{ cvterm_id => "assay_id" },
{
cascade_copy => 0,
cascade_delete => 0,
is_deferrable => 1,
join_type => "LEFT",
on_delete => "CASCADE",
on_update => "CASCADE",
},
);
__PACKAGE__->belongs_to(
"attr",
"Bio::Chado::Schema::Result::Cv::Cvterm",
{ cvterm_id => "attr_id" },
{
cascade_copy => 0,
cascade_delete => 0,
is_deferrable => 1,
join_type => "LEFT",
on_delete => "CASCADE",
on_update => "CASCADE",
},
);
__PACKAGE__->belongs_to(
"observable",
"Bio::Chado::Schema::Result::Cv::Cvterm",
{ cvterm_id => "observable_id" },
{
cascade_copy => 0,
cascade_delete => 0,
is_deferrable => 1,
join_type => "LEFT",
on_delete => "CASCADE",
on_update => "CASCADE",
},
);
__PACKAGE__->belongs_to(
"cvalue",
"Bio::Chado::Schema::Result::Cv::Cvterm",
{ cvterm_id => "cvalue_id" },
{
cascade_copy => 0,
cascade_delete => 0,
is_deferrable => 1,
join_type => "LEFT",
on_delete => "CASCADE",
on_update => "CASCADE",
},
);
__PACKAGE__->has_many(
"phenotype_comparison_phenotype1s",
"Bio::Chado::Schema::Result::Genetic::PhenotypeComparison",
{ "foreign.phenotype1_id" => "self.phenotype_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
__PACKAGE__->has_many(
"phenotype_comparison_phenotype2s",
"Bio::Chado::Schema::Result::Genetic::PhenotypeComparison",
{ "foreign.phenotype2_id" => "self.phenotype_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
__PACKAGE__->has_many(
"phenotype_cvterms",
"Bio::Chado::Schema::Result::Phenotype::PhenotypeCvterm",
{ "foreign.phenotype_id" => "self.phenotype_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
__PACKAGE__->has_many(
"phenstatements",
"Bio::Chado::Schema::Result::Genetic::Phenstatement",
{ "foreign.phenotype_id" => "self.phenotype_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
# Created by DBIx::Class::Schema::Loader v0.07010 @ 2011-03-16 23:09:59
# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:BQ6KZODWf4Lkio/RVuwL0Q
# You can replace this text with custom content, and it will be preserved on regeneration
1;
__END__