Bio::Chado::Schema::Result::Phylogeny::PhylonodeOrganism - Bio::Chado::Schema::Result::Phylogeny::PhylonodeOrganism documentation

Bio-Chado-Schema documentation Contained in the Bio-Chado-Schema distribution.

Index

Code Index:

NAME

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Bio::Chado::Schema::Result::Phylogeny::PhylonodeOrganism

DESCRIPTION

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This linking table should only be used for nodes in taxonomy trees; it provides a mapping between the node and an organism. One node can have zero or one organisms, one organism can have zero or more nodes (although typically it should only have one in the standard NCBI taxonomy tree).

NAME

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Bio::Chado::Schema::Result::Phylogeny::PhylonodeOrganism

ACCESSORS

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phylonode_organism_id

  data_type: 'integer'
  is_auto_increment: 1
  is_nullable: 0
  sequence: 'phylonode_organism_phylonode_organism_id_seq'

phylonode_id

  data_type: 'integer'
  is_foreign_key: 1
  is_nullable: 0

One phylonode cannot refer to >1 organism.

organism_id

  data_type: 'integer'
  is_foreign_key: 1
  is_nullable: 0

RELATIONS

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phylonode

Type: belongs_to

Related object: Bio::Chado::Schema::Result::Phylogeny::Phylonode

organism

Type: belongs_to

Related object: Bio::Chado::Schema::Result::Organism::Organism

AUTHOR

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Robert Buels <rbuels@cpan.org>

COPYRIGHT AND LICENSE

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This software is copyright (c) 2011 by Robert Buels.

This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.

Bio-Chado-Schema documentation Contained in the Bio-Chado-Schema distribution. 
package Bio::Chado::Schema::Result::Phylogeny::PhylonodeOrganism;
BEGIN {
  $Bio::Chado::Schema::Result::Phylogeny::PhylonodeOrganism::AUTHORITY = 'cpan:RBUELS';
}
BEGIN {
  $Bio::Chado::Schema::Result::Phylogeny::PhylonodeOrganism::VERSION = '0.08100';
}

# Created by DBIx::Class::Schema::Loader
# DO NOT MODIFY THE FIRST PART OF THIS FILE

use strict;
use warnings;

use base 'DBIx::Class::Core';



__PACKAGE__->table("phylonode_organism");


__PACKAGE__->add_columns(
  "phylonode_organism_id",
  {
    data_type         => "integer",
    is_auto_increment => 1,
    is_nullable       => 0,
    sequence          => "phylonode_organism_phylonode_organism_id_seq",
  },
  "phylonode_id",
  { data_type => "integer", is_foreign_key => 1, is_nullable => 0 },
  "organism_id",
  { data_type => "integer", is_foreign_key => 1, is_nullable => 0 },
);
__PACKAGE__->set_primary_key("phylonode_organism_id");
__PACKAGE__->add_unique_constraint("phylonode_organism_phylonode_id_key", ["phylonode_id"]);


__PACKAGE__->belongs_to(
  "phylonode",
  "Bio::Chado::Schema::Result::Phylogeny::Phylonode",
  { phylonode_id => "phylonode_id" },
  {
    cascade_copy   => 0,
    cascade_delete => 0,
    is_deferrable  => 1,
    on_delete      => "CASCADE",
    on_update      => "CASCADE",
  },
);


__PACKAGE__->belongs_to(
  "organism",
  "Bio::Chado::Schema::Result::Organism::Organism",
  { organism_id => "organism_id" },
  {
    cascade_copy   => 0,
    cascade_delete => 0,
    is_deferrable  => 1,
    on_delete      => "CASCADE",
    on_update      => "CASCADE",
  },
);


# Created by DBIx::Class::Schema::Loader v0.07010 @ 2011-03-16 23:09:59
# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:9+K+tdAa3FZn8QK19S5zrQ

# You can replace this text with custom content, and it will be preserved on regeneration
1;

__END__