Index
NAME
Bio::Chado::Schema::Result::Sequence::FeatureCvterm
DESCRIPTION
Associate a term from a cv with a feature, for example, GO annotation.
NAME
Bio::Chado::Schema::Result::Sequence::FeatureCvterm
ACCESSORS
feature_cvterm_id
data_type: 'integer' is_auto_increment: 1 is_nullable: 0 sequence: 'feature_cvterm_feature_cvterm_id_seq'
feature_id
data_type: 'integer' is_foreign_key: 1 is_nullable: 0
cvterm_id
data_type: 'integer' is_foreign_key: 1 is_nullable: 0
pub_id
data_type: 'integer' is_foreign_key: 1 is_nullable: 0
Provenance for the annotation. Each annotation should have a single primary publication (which may be of the appropriate type for computational analyses) where more details can be found. Additional provenance dbxrefs can be attached using feature_cvterm_dbxref.
is_not
data_type: 'boolean' default_value: false is_nullable: 0
If this is set to true, then this annotation is interpreted as a NEGATIVE annotation - i.e. the feature does NOT have the specified function, process, component, part, etc. See GO docs for more details.
rank
data_type: 'integer' default_value: 0 is_nullable: 0
RELATIONS
feature
Type: belongs_to
Related object: Bio::Chado::Schema::Result::Sequence::Feature
pub
Type: belongs_to
Related object: Bio::Chado::Schema::Result::Pub::Pub
cvterm
Type: belongs_to
Related object: Bio::Chado::Schema::Result::Cv::Cvterm
feature_cvterm_dbxrefs
Type: has_many
Related object: Bio::Chado::Schema::Result::Sequence::FeatureCvtermDbxref
feature_cvtermprops
Type: has_many
Related object: Bio::Chado::Schema::Result::Sequence::FeatureCvtermprop
feature_cvterm_pubs
Type: has_many
Related object: Bio::Chado::Schema::Result::Sequence::FeatureCvtermPub
AUTHOR
Robert Buels <rbuels@cpan.org>
COPYRIGHT AND LICENSE
This software is copyright (c) 2011 by Robert Buels.
This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.