Bio::Chado::Schema::Result::Sequence::FeatureCvterm - Bio::Chado::Schema::Result::Sequence::FeatureCvterm documentation
Index
Code Index:
NAME
Bio::Chado::Schema::Result::Sequence::FeatureCvterm
DESCRIPTION
Associate a term from a cv with a feature, for example, GO annotation.
NAME
Bio::Chado::Schema::Result::Sequence::FeatureCvterm
ACCESSORS
feature_cvterm_id
data_type: 'integer'
is_auto_increment: 1
is_nullable: 0
sequence: 'feature_cvterm_feature_cvterm_id_seq'
feature_id
data_type: 'integer'
is_foreign_key: 1
is_nullable: 0
cvterm_id
data_type: 'integer'
is_foreign_key: 1
is_nullable: 0
pub_id
data_type: 'integer'
is_foreign_key: 1
is_nullable: 0
Provenance for the annotation. Each annotation should have a single primary publication (which may be of the appropriate type for computational analyses) where more details can be found. Additional provenance dbxrefs can be attached using feature_cvterm_dbxref.
is_not
data_type: 'boolean'
default_value: false
is_nullable: 0
If this is set to true, then this annotation is interpreted as a NEGATIVE annotation - i.e. the feature does NOT have the specified function, process, component, part, etc. See GO docs for more details.
rank
data_type: 'integer'
default_value: 0
is_nullable: 0
RELATIONS
feature
pub
cvterm
feature_cvterm_dbxrefs
feature_cvtermprops
feature_cvterm_pubs
AUTHOR
Robert Buels <rbuels@cpan.org>
COPYRIGHT AND LICENSE
This software is copyright (c) 2011 by Robert Buels.
This is free software; you can redistribute it and/or modify it under
the same terms as the Perl 5 programming language system itself.
package Bio::Chado::Schema::Result::Sequence::FeatureCvterm;
BEGIN {
$Bio::Chado::Schema::Result::Sequence::FeatureCvterm::AUTHORITY = 'cpan:RBUELS';
}
BEGIN {
$Bio::Chado::Schema::Result::Sequence::FeatureCvterm::VERSION = '0.08100';
}
# Created by DBIx::Class::Schema::Loader
# DO NOT MODIFY THE FIRST PART OF THIS FILE
use strict;
use warnings;
use base 'DBIx::Class::Core';
__PACKAGE__->table("feature_cvterm");
__PACKAGE__->add_columns(
"feature_cvterm_id",
{
data_type => "integer",
is_auto_increment => 1,
is_nullable => 0,
sequence => "feature_cvterm_feature_cvterm_id_seq",
},
"feature_id",
{ data_type => "integer", is_foreign_key => 1, is_nullable => 0 },
"cvterm_id",
{ data_type => "integer", is_foreign_key => 1, is_nullable => 0 },
"pub_id",
{ data_type => "integer", is_foreign_key => 1, is_nullable => 0 },
"is_not",
{ data_type => "boolean", default_value => \"false", is_nullable => 0 },
"rank",
{ data_type => "integer", default_value => 0, is_nullable => 0 },
);
__PACKAGE__->set_primary_key("feature_cvterm_id");
__PACKAGE__->add_unique_constraint(
"feature_cvterm_c1",
["feature_id", "cvterm_id", "pub_id", "rank"],
);
__PACKAGE__->belongs_to(
"feature",
"Bio::Chado::Schema::Result::Sequence::Feature",
{ feature_id => "feature_id" },
{
cascade_copy => 0,
cascade_delete => 0,
is_deferrable => 1,
on_delete => "CASCADE",
on_update => "CASCADE",
},
);
__PACKAGE__->belongs_to(
"pub",
"Bio::Chado::Schema::Result::Pub::Pub",
{ pub_id => "pub_id" },
{
cascade_copy => 0,
cascade_delete => 0,
is_deferrable => 1,
on_delete => "CASCADE",
on_update => "CASCADE",
},
);
__PACKAGE__->belongs_to(
"cvterm",
"Bio::Chado::Schema::Result::Cv::Cvterm",
{ cvterm_id => "cvterm_id" },
{
cascade_copy => 0,
cascade_delete => 0,
is_deferrable => 1,
on_delete => "CASCADE",
on_update => "CASCADE",
},
);
__PACKAGE__->has_many(
"feature_cvterm_dbxrefs",
"Bio::Chado::Schema::Result::Sequence::FeatureCvtermDbxref",
{ "foreign.feature_cvterm_id" => "self.feature_cvterm_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
__PACKAGE__->has_many(
"feature_cvtermprops",
"Bio::Chado::Schema::Result::Sequence::FeatureCvtermprop",
{ "foreign.feature_cvterm_id" => "self.feature_cvterm_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
__PACKAGE__->has_many(
"feature_cvterm_pubs",
"Bio::Chado::Schema::Result::Sequence::FeatureCvtermPub",
{ "foreign.feature_cvterm_id" => "self.feature_cvterm_id" },
{ cascade_copy => 0, cascade_delete => 0 },
);
# Created by DBIx::Class::Schema::Loader v0.07010 @ 2011-03-16 23:09:58
# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:IqSwB2Dg1C4TQu+BLEk5uQ
# You can replace this text with custom content, and it will be preserved on regeneration
1;
__END__