Bio::Chado::Schema::Result::Stock::Stock - Bio::Chado::Schema::Result::Stock::Stock documentation

  data_type: 'integer'
  is_auto_increment: 1
  is_nullable: 0
  sequence: 'stock_stock_id_seq'

  data_type: 'integer'
  is_foreign_key: 1
  is_nullable: 1

  data_type: 'integer'
  is_foreign_key: 1
  is_nullable: 1

  data_type: 'varchar'
  is_nullable: 1
  size: 255

  data_type: 'text'
  is_nullable: 0

  data_type: 'text'
  is_nullable: 1

  data_type: 'integer'
  is_foreign_key: 1
  is_nullable: 0

  data_type: 'boolean'
  default_value: false
  is_nullable: 0

  Usage: $set->create_stockprops({ baz => 2, foo => 'bar' });
  Desc : convenience method to create stock properties using cvterms
          from the ontology with the given name
  Args : hashref of { propname => value, ...},
         options hashref as:
          {
            autocreate => 0,
               (optional) boolean, if passed, automatically create cv,
               cvterm, and dbxref rows if one cannot be found for the
               given stockprop name.  Default false.

            cv_name => cv.name to use for the given stockprops.
                       Defaults to 'stock_property',

            db_name => db.name to use for autocreated dbxrefs,
                       default 'null',

            dbxref_accession_prefix => optional, default
                                       'autocreated:',
            definitions => optional hashref of:
                { cvterm_name => definition,
                }
             to load into the cvterm table when autocreating cvterms

             rank => force numeric rank. Be careful not to pass ranks that already exist
                     for the property type. The function will die in such case.

             allow_duplicate_values => default false.
                If true, allow duplicate instances of the same stock
                and value in the properties of the stock.  Duplicate
                values will have different ranks.
          }
  Ret  : hashref of { propname => new stockprop object }

package Bio::Chado::Schema::Result::Stock::Stock;
BEGIN {
  $Bio::Chado::Schema::Result::Stock::Stock::AUTHORITY = 'cpan:RBUELS';
}
BEGIN {
  $Bio::Chado::Schema::Result::Stock::Stock::VERSION = '0.08100';
}

# Created by DBIx::Class::Schema::Loader
# DO NOT MODIFY THE FIRST PART OF THIS FILE

use strict;
use warnings;

use base 'DBIx::Class::Core';



__PACKAGE__->table("stock");


__PACKAGE__->add_columns(
  "stock_id",
  {
    data_type         => "integer",
    is_auto_increment => 1,
    is_nullable       => 0,
    sequence          => "stock_stock_id_seq",
  },
  "dbxref_id",
  { data_type => "integer", is_foreign_key => 1, is_nullable => 1 },
  "organism_id",
  { data_type => "integer", is_foreign_key => 1, is_nullable => 1 },
  "name",
  { data_type => "varchar", is_nullable => 1, size => 255 },
  "uniquename",
  { data_type => "text", is_nullable => 0 },
  "description",
  { data_type => "text", is_nullable => 1 },
  "type_id",
  { data_type => "integer", is_foreign_key => 1, is_nullable => 0 },
  "is_obsolete",
  { data_type => "boolean", default_value => \"false", is_nullable => 0 },
);
__PACKAGE__->set_primary_key("stock_id");
__PACKAGE__->add_unique_constraint("stock_c1", ["organism_id", "uniquename", "type_id"]);


__PACKAGE__->has_many(
  "nd_experiment_stocks",
  "Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentStock",
  { "foreign.stock_id" => "self.stock_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);


__PACKAGE__->belongs_to(
  "dbxref",
  "Bio::Chado::Schema::Result::General::Dbxref",
  { dbxref_id => "dbxref_id" },
  {
    cascade_copy   => 0,
    cascade_delete => 0,
    is_deferrable  => 1,
    join_type      => "LEFT",
    on_delete      => "CASCADE",
    on_update      => "CASCADE",
  },
);


__PACKAGE__->belongs_to(
  "type",
  "Bio::Chado::Schema::Result::Cv::Cvterm",
  { cvterm_id => "type_id" },
  {
    cascade_copy   => 0,
    cascade_delete => 0,
    is_deferrable  => 1,
    on_delete      => "CASCADE",
    on_update      => "CASCADE",
  },
);


__PACKAGE__->belongs_to(
  "organism",
  "Bio::Chado::Schema::Result::Organism::Organism",
  { organism_id => "organism_id" },
  {
    cascade_copy   => 0,
    cascade_delete => 0,
    is_deferrable  => 1,
    join_type      => "LEFT",
    on_delete      => "CASCADE",
    on_update      => "CASCADE",
  },
);


__PACKAGE__->has_many(
  "stockcollection_stocks",
  "Bio::Chado::Schema::Result::Stock::StockcollectionStock",
  { "foreign.stock_id" => "self.stock_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);


__PACKAGE__->has_many(
  "stock_cvterms",
  "Bio::Chado::Schema::Result::Stock::StockCvterm",
  { "foreign.stock_id" => "self.stock_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);


__PACKAGE__->has_many(
  "stock_dbxrefs",
  "Bio::Chado::Schema::Result::Stock::StockDbxref",
  { "foreign.stock_id" => "self.stock_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);


__PACKAGE__->has_many(
  "stock_genotypes",
  "Bio::Chado::Schema::Result::Stock::StockGenotype",
  { "foreign.stock_id" => "self.stock_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);


__PACKAGE__->has_many(
  "stockprops",
  "Bio::Chado::Schema::Result::Stock::Stockprop",
  { "foreign.stock_id" => "self.stock_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);


__PACKAGE__->has_many(
  "stock_pubs",
  "Bio::Chado::Schema::Result::Stock::StockPub",
  { "foreign.stock_id" => "self.stock_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);


__PACKAGE__->has_many(
  "stock_relationship_subjects",
  "Bio::Chado::Schema::Result::Stock::StockRelationship",
  { "foreign.subject_id" => "self.stock_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);


__PACKAGE__->has_many(
  "stock_relationship_objects",
  "Bio::Chado::Schema::Result::Stock::StockRelationship",
  { "foreign.object_id" => "self.stock_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);


# Created by DBIx::Class::Schema::Loader v0.07010 @ 2011-03-16 23:09:59
# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:v+GluxMkFEC508znwinNsA



sub create_stockprops {
    my ($self, $props, $opts) = @_;

    # process opts
    $opts->{cv_name} = 'stock_property'
        unless defined $opts->{cv_name};
    return Bio::Chado::Schema::Util->create_properties
        ( properties => $props,
          options    => $opts,
          row        => $self,
          prop_relation_name => 'stockprops',
        );
}


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1;


__END__