Bio::Chado::Schema::Result::Stock::StockCvtermprop - Bio::Chado::Schema::Result::Stock::StockCvtermprop documentation

Bio-Chado-Schema documentation Contained in the Bio-Chado-Schema distribution.

Index

Code Index:

NAME

Top

Bio::Chado::Schema::Result::Stock::StockCvtermprop

DESCRIPTION

Top

Extensible properties for stock to cvterm associations. Examples: GO evidence codes; qualifiers; metadata such as the date on which the entry was curated and the source of the association. See the stockprop table for meanings of type_id, value and rank.

NAME

Top

Bio::Chado::Schema::Result::Stock::StockCvtermprop

ACCESSORS

Top

stock_cvtermprop_id

  data_type: 'integer'
  is_auto_increment: 1
  is_nullable: 0
  sequence: 'stock_cvtermprop_stock_cvtermprop_id_seq'

stock_cvterm_id

  data_type: 'integer'
  is_foreign_key: 1
  is_nullable: 0

type_id

  data_type: 'integer'
  is_foreign_key: 1
  is_nullable: 0

The name of the property/slot is a cvterm. The meaning of the property is defined in that cvterm. cvterms may come from the OBO evidence code cv.

value

  data_type: 'text'
  is_nullable: 1

The value of the property, represented as text. Numeric values are converted to their text representation. This is less efficient than using native database types, but is easier to query.

rank

  data_type: 'integer'
  default_value: 0
  is_nullable: 0

Property-Value ordering. Any stock_cvterm can have multiple values for any particular property type - these are ordered in a list using rank, counting from zero. For properties that are single-valued rather than multi-valued, the default 0 value should be used.

RELATIONS

Top

type

Type: belongs_to

Related object: Bio::Chado::Schema::Result::Cv::Cvterm

stock_cvterm

Type: belongs_to

Related object: Bio::Chado::Schema::Result::Stock::StockCvterm

AUTHOR

Top

Robert Buels <rbuels@cpan.org>

COPYRIGHT AND LICENSE

Top

This software is copyright (c) 2011 by Robert Buels.

This is free software; you can redistribute it and/or modify it under the same terms as the Perl 5 programming language system itself.

Bio-Chado-Schema documentation Contained in the Bio-Chado-Schema distribution. 
package Bio::Chado::Schema::Result::Stock::StockCvtermprop;
BEGIN {
  $Bio::Chado::Schema::Result::Stock::StockCvtermprop::AUTHORITY = 'cpan:RBUELS';
}
BEGIN {
  $Bio::Chado::Schema::Result::Stock::StockCvtermprop::VERSION = '0.08100';
}

# Created by DBIx::Class::Schema::Loader
# DO NOT MODIFY THE FIRST PART OF THIS FILE

use strict;
use warnings;

use base 'DBIx::Class::Core';



__PACKAGE__->table("stock_cvtermprop");


__PACKAGE__->add_columns(
  "stock_cvtermprop_id",
  {
    data_type         => "integer",
    is_auto_increment => 1,
    is_nullable       => 0,
    sequence          => "stock_cvtermprop_stock_cvtermprop_id_seq",
  },
  "stock_cvterm_id",
  { data_type => "integer", is_foreign_key => 1, is_nullable => 0 },
  "type_id",
  { data_type => "integer", is_foreign_key => 1, is_nullable => 0 },
  "value",
  { data_type => "text", is_nullable => 1 },
  "rank",
  { data_type => "integer", default_value => 0, is_nullable => 0 },
);
__PACKAGE__->set_primary_key("stock_cvtermprop_id");
__PACKAGE__->add_unique_constraint("stock_cvtermprop_c1", ["stock_cvterm_id", "type_id", "rank"]);


__PACKAGE__->belongs_to(
  "type",
  "Bio::Chado::Schema::Result::Cv::Cvterm",
  { cvterm_id => "type_id" },
  {
    cascade_copy   => 0,
    cascade_delete => 0,
    is_deferrable  => 1,
    on_delete      => "CASCADE",
    on_update      => "CASCADE",
  },
);


__PACKAGE__->belongs_to(
  "stock_cvterm",
  "Bio::Chado::Schema::Result::Stock::StockCvterm",
  { stock_cvterm_id => "stock_cvterm_id" },
  {
    cascade_copy   => 0,
    cascade_delete => 0,
    is_deferrable  => 1,
    on_delete      => "CASCADE",
    on_update      => "CASCADE",
  },
);


# Created by DBIx::Class::Schema::Loader v0.07010 @ 2011-03-16 23:14:45
# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:kstVVbKhfvzBPTEuTgYoIg


# You can replace this text with custom code or comments, and it will be preserved on regeneration
1;

__END__