Version 1.17 Tue Jun 29 15:42:08 EDT 2010
- Improved stylesheet generation: fixed a bug involving memoization of
the glyph() routine that was returning the wrong glyph in some circumstances.
Version 1.16 Mon Jun 21 13:32:56 EDT 2010
- Fixed aggregation of groups so that type of parent is correct. This
fixes gbrowse client issues.
Version 1.15 Fri Jun 11 12:37:46 EDT 2010,
- Skip some regression tests because test server not currently running.
Version 1.14
- When the Bio::Graphics render() method is called, the stylesheet will be cached
for a (hard-coded) five minute period. This makes subsequent operations faster.
Wed Aug 26 17:56:08 EDT 2009
- Support part of DAS/1.6
- Fix stylesheet bugs
- Aggregators no longer needed for most common cases
Thu Jun 4 17:55:47 EDT 2009 (version 1.11)
- Support DAS/1.5E
2008-05-28 Lincoln Stein <lstein@cshl.org> (version 1.09)
- Fixed bugs in the render() method which prevented stylesheet
instructions for label and bumping to be ignored in some cases.
2008-05-19 Lincoln Stein <lstein@cshl.org> (version 1.08)
- Fixed regression tests to be less sensitive to wormbase data changes.
2008-02-27 Lincoln Stein <lstein@cshl.org> (version 1.07)
- Support LocationI interface, to prevent clashes with recent bioperl.
2007-09-06 Lincoln Stein <lstein@cshl.org> (version 1.06)
- Quenched "redefined subroutine" warning.
2007-09-06 Lincoln Stein <lstein@cshl.org> (version 1.05)
- When aggregators are in use, the features request now fetches
both aggregator component and aggregator method name.
This fixes an ambiguity in how such composite features should be handled by
the server.
- The note parsing functionality now accepts TYPED notes: <NOTE tag="dbxref">www.jax.org</NOTE>.
These get turned into bioperl-style tags, which in turn can be read using each_tag_value(), etc.
2006-09-15 Lincoln Stein <lstein@cshl.org>
- Added support for proxies at init time.
2005-08-24 Lincoln Stein <lstein@cshl.edu>
- Minor tweak to API to work more nicely with gbrowse.
2005-04-20 Lincoln Stein <lstein@cshl.edu>
- Added support for arbitrary sequence retrieval contributed by Andreas Kahari
2004-07-08 Lincoln Stein <lstein@cshl.edu>
- Hard-code Errno constants on Windows platforms
- Throw exception when requested to perform non-overlaps range query.
2004-06-20 Lincoln Stein <lstein@cshl.edu>
- Compatibility fixes for Bio::PrimarySeqI
2004-02-23 Lincoln Stein <lstein@cshl.edu>
- Fixed lots of little aggregator bugs that interfered with
GBrowse.
- Workaround for Ensembl/Dazzle implementation which puts
"ensembl" in the method field of all features rather than
in the source field.
2004-01-14 Lincoln Stein <lstein@cshl.edu>
- Added prerequisite for Bio::Root::Root (in bioperl).
- Added META.yml to manifest.
2004-01-12 Lincoln Stein <lstein@cshl.edu>
2004-01-02 Lincoln Stein <lstein@cshl.edu>
- Fixed authentication routines so that auth information isn't sent
in the URL. Also fixed handling of authentication so that when one
server needs to be authenticated, it doesn't cancel processing of requests
from other servers.
- Cleaned up and completed documentation.
2003-12-29 Lincoln Stein <lstein@cshl.edu>
- Numerous small compatibility changes to work as a remote annotation
source for gbrowse. Stylesheets should be working
properly now.
2003-05-24 Tony Cox <avc@sanger.ac.uk>
- Checked in modules to run a small DAS reference server from an AGP file
2003-05-22 Tony Cox <avc@sanger.ac.uk>
- Fixes feature requests so that they can use feature_id/group_id
- Additions to feature XML parser. Just about all tags/attributes are now available.
2002-11-13 Lincoln Stein <lstein@cshl.org>
- HTTP request now sends Host: header, allowing virtual hosts to
function properly