/usr/local/CPAN/Bio-Emboss/Bio/Emboss/Methods.pm
package Bio::Emboss::Methods;
# automatically generated by scripts/get_methods.pl on Fri Aug 10 15:40:14 2007
# This file defines the methods that are available for certain classes
# (i.e. certain EMBOSS types "AjP...")
#
# If an EMBOSS library function has an AjP... type as a first parameter,
# this function can be used as a method on that data type.
#
# This information is extracted from .xs files by "scripts/get_methods.pl"
#
# Bio::Emboss.pm can EXPORT several functions on request into the callers
# namespace. Lists of functions are created for some EXPORT tags.
package Bio::Emboss::3dVector;
*aj3dVectorDel = *Bio::Emboss::aj3dVectorDel;
*aj3dVectorCrossProduct = *Bio::Emboss::aj3dVectorCrossProduct;
*aj3dVectorBetweenPoints = *Bio::Emboss::aj3dVectorBetweenPoints;
*aj3dVectorLength = *Bio::Emboss::aj3dVectorLength;
*aj3dVectorAngle = *Bio::Emboss::aj3dVectorAngle;
*aj3dVectorDihedralAngle = *Bio::Emboss::aj3dVectorDihedralAngle;
*aj3dVectorDotProduct = *Bio::Emboss::aj3dVectorDotProduct;
*aj3dVectorSum = *Bio::Emboss::aj3dVectorSum;
package Bio::Emboss::Align;
*ajAlignDefine = *Bio::Emboss::ajAlignDefine;
*ajAlignDefineSS = *Bio::Emboss::ajAlignDefineSS;
*ajAlignDefineCC = *Bio::Emboss::ajAlignDefineCC;
*ajAlignDel = *Bio::Emboss::ajAlignDel;
*ajAlignReset = *Bio::Emboss::ajAlignReset;
*ajAlignOpen = *Bio::Emboss::ajAlignOpen;
*ajAlignGetFilename = *Bio::Emboss::ajAlignGetFilename;
*ajAlignGetFormat = *Bio::Emboss::ajAlignGetFormat;
*ajAlignValid = *Bio::Emboss::ajAlignValid;
*ajAlignWrite = *Bio::Emboss::ajAlignWrite;
*ajAlignClose = *Bio::Emboss::ajAlignClose;
*ajAlignWriteHeader = *Bio::Emboss::ajAlignWriteHeader;
*ajAlignWriteTail = *Bio::Emboss::ajAlignWriteTail;
*ajAlignSetHeader = *Bio::Emboss::ajAlignSetHeader;
*ajAlignSetHeaderC = *Bio::Emboss::ajAlignSetHeaderC;
*ajAlignSetHeaderApp = *Bio::Emboss::ajAlignSetHeaderApp;
*ajAlignSetTail = *Bio::Emboss::ajAlignSetTail;
*ajAlignSetTailC = *Bio::Emboss::ajAlignSetTailC;
*ajAlignSetTailApp = *Bio::Emboss::ajAlignSetTailApp;
*ajAlignSetSubTail = *Bio::Emboss::ajAlignSetSubTail;
*ajAlignSetSubTailC = *Bio::Emboss::ajAlignSetSubTailC;
*ajAlignSetSubTailApp = *Bio::Emboss::ajAlignSetSubTailApp;
*ajAlignSetSubHeader = *Bio::Emboss::ajAlignSetSubHeader;
*ajAlignSetSubHeaderC = *Bio::Emboss::ajAlignSetSubHeaderC;
*ajAlignSetSubHeaderApp = *Bio::Emboss::ajAlignSetSubHeaderApp;
*ajAlignSetSubHeaderPre = *Bio::Emboss::ajAlignSetSubHeaderPre;
*ajAlignSetMatrixName = *Bio::Emboss::ajAlignSetMatrixName;
*ajAlignSetMatrixNameC = *Bio::Emboss::ajAlignSetMatrixNameC;
*ajAlignSetMatrixInt = *Bio::Emboss::ajAlignSetMatrixInt;
*ajAlignSetMatrixFloat = *Bio::Emboss::ajAlignSetMatrixFloat;
*ajAlignSetGapI = *Bio::Emboss::ajAlignSetGapI;
*ajAlignSetGapR = *Bio::Emboss::ajAlignSetGapR;
*ajAlignSetScoreI = *Bio::Emboss::ajAlignSetScoreI;
*ajAlignSetScoreL = *Bio::Emboss::ajAlignSetScoreL;
*ajAlignSetScoreR = *Bio::Emboss::ajAlignSetScoreR;
*ajAlignSetStats = *Bio::Emboss::ajAlignSetStats;
*ajAlignSetSubStandard = *Bio::Emboss::ajAlignSetSubStandard;
*ajAlignSetType = *Bio::Emboss::ajAlignSetType;
*ajAlignSetExternal = *Bio::Emboss::ajAlignSetExternal;
*ajAlignSetRange = *Bio::Emboss::ajAlignSetRange;
*ajAlignSetSubRange = *Bio::Emboss::ajAlignSetSubRange;
*ajAlignTraceT = *Bio::Emboss::ajAlignTraceT;
*ajAlignTrace = *Bio::Emboss::ajAlignTrace;
*ajAlignGetLen = *Bio::Emboss::ajAlignGetLen;
package Bio::Emboss::Atom;
*ajAtomDel = *Bio::Emboss::ajAtomDel;
*ajAtomCopy = *Bio::Emboss::ajAtomCopy;
*embAtomInContact = *Bio::Emboss::embAtomInContact;
*embAtomDistance = *Bio::Emboss::embAtomDistance;
*embVdwRad = *Bio::Emboss::embVdwRad;
package Bio::Emboss::BtHybrid;
*ajBtreeHybDel = *Bio::Emboss::ajBtreeHybDel;
package Bio::Emboss::BtId;
*ajBtreeIdDel = *Bio::Emboss::ajBtreeIdDel;
package Bio::Emboss::BtKeyWild;
*ajBtreeKeyWildDel = *Bio::Emboss::ajBtreeKeyWildDel;
package Bio::Emboss::BtPri;
*ajBtreePriDel = *Bio::Emboss::ajBtreePriDel;
package Bio::Emboss::BtWild;
*ajBtreeWildDel = *Bio::Emboss::ajBtreeWildDel;
package Bio::Emboss::Btcache;
*ajBtreeCacheDel = *Bio::Emboss::ajBtreeCacheDel;
*ajBtreeCacheRead = *Bio::Emboss::ajBtreeCacheRead;
*ajBtreeCacheSync = *Bio::Emboss::ajBtreeCacheSync;
*ajBtreeCacheWrite = *Bio::Emboss::ajBtreeCacheWrite;
*ajBtreeCreateRootNode = *Bio::Emboss::ajBtreeCreateRootNode;
*ajBtreeFindInsert = *Bio::Emboss::ajBtreeFindInsert;
*ajBtreeInsertId = *Bio::Emboss::ajBtreeInsertId;
*ajBtreeIdFromKey = *Bio::Emboss::ajBtreeIdFromKey;
*ajBtreeWriteParams = *Bio::Emboss::ajBtreeWriteParams;
*ajBtreeDeleteId = *Bio::Emboss::ajBtreeDeleteId;
*ajBtreeWildNew = *Bio::Emboss::ajBtreeWildNew;
*ajBtreeKeyWildNew = *Bio::Emboss::ajBtreeKeyWildNew;
*ajBtreeFindInsertW = *Bio::Emboss::ajBtreeFindInsertW;
*ajBtreeIdFromKeyW = *Bio::Emboss::ajBtreeIdFromKeyW;
*ajBtreeListFromKeyW = *Bio::Emboss::ajBtreeListFromKeyW;
*ajBtreeReplaceId = *Bio::Emboss::ajBtreeReplaceId;
*ajBtreeInsertDupId = *Bio::Emboss::ajBtreeInsertDupId;
*ajBtreeDupFromKey = *Bio::Emboss::ajBtreeDupFromKey;
*ajBtreeInsertKeyword = *Bio::Emboss::ajBtreeInsertKeyword;
*ajBtreePriFromKeyword = *Bio::Emboss::ajBtreePriFromKeyword;
*ajBtreeInsertSecId = *Bio::Emboss::ajBtreeInsertSecId;
*ajBtreeSecFromId = *Bio::Emboss::ajBtreeSecFromId;
*ajBtreeSecFindInsert = *Bio::Emboss::ajBtreeSecFindInsert;
*ajBtreeLockTest = *Bio::Emboss::ajBtreeLockTest;
*ajBtreeSecLeafList = *Bio::Emboss::ajBtreeSecLeafList;
*ajBtreeVerifyId = *Bio::Emboss::ajBtreeVerifyId;
*ajBtreeIdFromKeywordW = *Bio::Emboss::ajBtreeIdFromKeywordW;
*ajBtreeListFromKeywordW = *Bio::Emboss::ajBtreeListFromKeywordW;
*ajBtreeHybFindInsert = *Bio::Emboss::ajBtreeHybFindInsert;
*ajBtreeHybInsertId = *Bio::Emboss::ajBtreeHybInsertId;
*ajBtreeNumFindInsert = *Bio::Emboss::ajBtreeNumFindInsert;
*ajBtreeInsertNum = *Bio::Emboss::ajBtreeInsertNum;
*ajBtreeFreePriArray = *Bio::Emboss::ajBtreeFreePriArray;
*ajBtreeFreeSecArray = *Bio::Emboss::ajBtreeFreeSecArray;
*ajBtreeHybLeafList = *Bio::Emboss::ajBtreeHybLeafList;
*ajBtreeDumpHybKeys = *Bio::Emboss::ajBtreeDumpHybKeys;
package Bio::Emboss::Cath;
*ajCathDel = *Bio::Emboss::ajCathDel;
*ajCathCopy = *Bio::Emboss::ajCathCopy;
*ajCathArrFindPdbid = *Bio::Emboss::ajCathArrFindPdbid;
package Bio::Emboss::Chain;
*ajChainDel = *Bio::Emboss::ajChainDel;
package Bio::Emboss::Char;
*ajChararrDel = *Bio::Emboss::ajChararrDel;
*ajChararrGet = *Bio::Emboss::ajChararrGet;
*ajChararrPut = *Bio::Emboss::ajChararrPut;
*ajChararrChararr = *Bio::Emboss::ajChararrChararr;
package Bio::Emboss::Cmap;
*ajCmapDel = *Bio::Emboss::ajCmapDel;
package Bio::Emboss::Cod;
*ajCodDup = *Bio::Emboss::ajCodDup;
*ajCodDel = *Bio::Emboss::ajCodDel;
*ajCodCalcGribskov = *Bio::Emboss::ajCodCalcGribskov;
*ajCodCalcNc = *Bio::Emboss::ajCodCalcNc;
*ajCodCalculateUsage = *Bio::Emboss::ajCodCalculateUsage;
*ajCodClear = *Bio::Emboss::ajCodClear;
*ajCodClearData = *Bio::Emboss::ajCodClearData;
*ajCodCountTriplets = *Bio::Emboss::ajCodCountTriplets;
*ajCodRead = *Bio::Emboss::ajCodRead;
*ajCodSetBacktranslate = *Bio::Emboss::ajCodSetBacktranslate;
*ajCodWriteOut = *Bio::Emboss::ajCodWriteOut;
*ajCodWrite = *Bio::Emboss::ajCodWrite;
*ajCodCalcCai = *Bio::Emboss::ajCodCalcCai;
*ajCodCaiW = *Bio::Emboss::ajCodCaiW;
*ajCodCai = *Bio::Emboss::ajCodCai;
*ajCodGetName = *Bio::Emboss::ajCodGetName;
*ajCodGetNameC = *Bio::Emboss::ajCodGetNameC;
*ajCodGetDesc = *Bio::Emboss::ajCodGetDesc;
*ajCodGetDescC = *Bio::Emboss::ajCodGetDescC;
*ajCodGetSpecies = *Bio::Emboss::ajCodGetSpecies;
*ajCodGetSpeciesC = *Bio::Emboss::ajCodGetSpeciesC;
*ajCodGetDivision = *Bio::Emboss::ajCodGetDivision;
*ajCodGetDivisionC = *Bio::Emboss::ajCodGetDivisionC;
*ajCodGetRelease = *Bio::Emboss::ajCodGetRelease;
*ajCodGetReleaseC = *Bio::Emboss::ajCodGetReleaseC;
*ajCodGetNumcodon = *Bio::Emboss::ajCodGetNumcodon;
*ajCodGetNumcds = *Bio::Emboss::ajCodGetNumcds;
*ajCodGetCode = *Bio::Emboss::ajCodGetCode;
*ajCodAssName = *Bio::Emboss::ajCodAssName;
*ajCodAssNameC = *Bio::Emboss::ajCodAssNameC;
*ajCodAssDesc = *Bio::Emboss::ajCodAssDesc;
*ajCodAssDescC = *Bio::Emboss::ajCodAssDescC;
*ajCodAssSpecies = *Bio::Emboss::ajCodAssSpecies;
*ajCodAssSpeciesC = *Bio::Emboss::ajCodAssSpeciesC;
*ajCodAssRelease = *Bio::Emboss::ajCodAssRelease;
*ajCodAssReleaseC = *Bio::Emboss::ajCodAssReleaseC;
*ajCodAssDivision = *Bio::Emboss::ajCodAssDivision;
*ajCodAssDivisionC = *Bio::Emboss::ajCodAssDivisionC;
*ajCodAssNumcodon = *Bio::Emboss::ajCodAssNumcodon;
*ajCodAssNumcds = *Bio::Emboss::ajCodAssNumcds;
*ajCodAssCode = *Bio::Emboss::ajCodAssCode;
*ajCodGetCodonlist = *Bio::Emboss::ajCodGetCodonlist;
package Bio::Emboss::Dir;
*ajDirName = *Bio::Emboss::ajDirName;
*ajDirExt = *Bio::Emboss::ajDirExt;
*ajFileNewOutDir = *Bio::Emboss::ajFileNewOutDir;
*ajDirDel = *Bio::Emboss::ajDirDel;
*ajDiroutDel = *Bio::Emboss::ajDiroutDel;
*ajFileNewDirF = *Bio::Emboss::ajFileNewDirF;
package Bio::Emboss::Domain;
*ajDomainDel = *Bio::Emboss::ajDomainDel;
*ajDomainCopy = *Bio::Emboss::ajDomainCopy;
*ajDomainGetId = *Bio::Emboss::ajDomainGetId;
*ajDomainGetSeqPdb = *Bio::Emboss::ajDomainGetSeqPdb;
*ajDomainGetSeqSpr = *Bio::Emboss::ajDomainGetSeqSpr;
*ajDomainGetPdb = *Bio::Emboss::ajDomainGetPdb;
*ajDomainGetAcc = *Bio::Emboss::ajDomainGetAcc;
*ajDomainGetSpr = *Bio::Emboss::ajDomainGetSpr;
*ajDomainGetN = *Bio::Emboss::ajDomainGetN;
package Bio::Emboss::Double;
*ajDoubleDel = *Bio::Emboss::ajDoubleDel;
*ajDoubleGet = *Bio::Emboss::ajDoubleGet;
*ajDoublePut = *Bio::Emboss::ajDoublePut;
*ajDoubleDouble = *Bio::Emboss::ajDoubleDouble;
*ajDoubleLen = *Bio::Emboss::ajDoubleLen;
package Bio::Emboss::Double2d;
*ajDouble2dDel = *Bio::Emboss::ajDouble2dDel;
*ajDouble2dGet = *Bio::Emboss::ajDouble2dGet;
*ajDouble2dPut = *Bio::Emboss::ajDouble2dPut;
*ajDouble2dLen = *Bio::Emboss::ajDouble2dLen;
*ajDouble2dDouble = *Bio::Emboss::ajDouble2dDouble;
package Bio::Emboss::Double3d;
*ajDouble3dDel = *Bio::Emboss::ajDouble3dDel;
*ajDouble3dGet = *Bio::Emboss::ajDouble3dGet;
*ajDouble3dPut = *Bio::Emboss::ajDouble3dPut;
*ajDouble3dLen = *Bio::Emboss::ajDouble3dLen;
*ajDouble3dDouble = *Bio::Emboss::ajDouble3dDouble;
package Bio::Emboss::FeattabIn;
*ajFeatRead = *Bio::Emboss::ajFeatRead;
*ajFeattabInDel = *Bio::Emboss::ajFeattabInDel;
*ajFeattabInClear = *Bio::Emboss::ajFeattabInClear;
*ajFeattabInSetType = *Bio::Emboss::ajFeattabInSetType;
*ajFeattabInSetTypeC = *Bio::Emboss::ajFeattabInSetTypeC;
*ajFeatUfoRead = *Bio::Emboss::ajFeatUfoRead;
package Bio::Emboss::FeattabOut;
*ajFeattabOutOpen = *Bio::Emboss::ajFeattabOutOpen;
*ajFeattabOutFile = *Bio::Emboss::ajFeattabOutFile;
*ajFeattabOutFilename = *Bio::Emboss::ajFeattabOutFilename;
*ajFeattabOutIsOpen = *Bio::Emboss::ajFeattabOutIsOpen;
*ajFeattabOutIsLocal = *Bio::Emboss::ajFeattabOutIsLocal;
*ajFeattabOutSet = *Bio::Emboss::ajFeattabOutSet;
*ajFeattabOutSetBasename = *Bio::Emboss::ajFeattabOutSetBasename;
*ajFeatWrite = *Bio::Emboss::ajFeatWrite;
*ajFeattabOutSetType = *Bio::Emboss::ajFeattabOutSetType;
*ajFeattabOutSetTypeC = *Bio::Emboss::ajFeattabOutSetTypeC;
*ajFeattabOutDel = *Bio::Emboss::ajFeattabOutDel;
*ajFeattabOutClear = *Bio::Emboss::ajFeattabOutClear;
package Bio::Emboss::Feattable;
*ajFeatNew = *Bio::Emboss::ajFeatNew;
*ajFeatNewII = *Bio::Emboss::ajFeatNewII;
*ajFeatNewIIRev = *Bio::Emboss::ajFeatNewIIRev;
*ajFeatNewProt = *Bio::Emboss::ajFeatNewProt;
*ajFeattableDel = *Bio::Emboss::ajFeattableDel;
*ajFeatUfoWrite = *Bio::Emboss::ajFeatUfoWrite;
*ajFeattableWrite = *Bio::Emboss::ajFeattableWrite;
*ajFeatSortByType = *Bio::Emboss::ajFeatSortByType;
*ajFeatSortByStart = *Bio::Emboss::ajFeatSortByStart;
*ajFeatSortByEnd = *Bio::Emboss::ajFeatSortByEnd;
*ajFeattableAdd = *Bio::Emboss::ajFeattableAdd;
*ajFeattableClear = *Bio::Emboss::ajFeattableClear;
*ajFeattableWriteGff = *Bio::Emboss::ajFeattableWriteGff;
*ajFeattableWriteDdbj = *Bio::Emboss::ajFeattableWriteDdbj;
*ajFeattableWriteEmbl = *Bio::Emboss::ajFeattableWriteEmbl;
*ajFeattableWriteGenbank = *Bio::Emboss::ajFeattableWriteGenbank;
*ajFeattableWriteSwiss = *Bio::Emboss::ajFeattableWriteSwiss;
*ajFeattableWritePir = *Bio::Emboss::ajFeattableWritePir;
*ajFeattableGetName = *Bio::Emboss::ajFeattableGetName;
*ajFeattableGetTypeC = *Bio::Emboss::ajFeattableGetTypeC;
*ajFeattableGetTypeS = *Bio::Emboss::ajFeattableGetTypeS;
*ajFeattableIsNuc = *Bio::Emboss::ajFeattableIsNuc;
*ajFeattableIsProt = *Bio::Emboss::ajFeattableIsProt;
*ajFeattableBegin = *Bio::Emboss::ajFeattableBegin;
*ajFeattableEnd = *Bio::Emboss::ajFeattableEnd;
*ajFeattableLen = *Bio::Emboss::ajFeattableLen;
*ajFeattableSize = *Bio::Emboss::ajFeattableSize;
*ajFeattableSetNuc = *Bio::Emboss::ajFeattableSetNuc;
*ajFeattableSetProt = *Bio::Emboss::ajFeattableSetProt;
*ajFeattableReverse = *Bio::Emboss::ajFeattableReverse;
*ajFeattableSetRange = *Bio::Emboss::ajFeattableSetRange;
*ajFeattableCopy = *Bio::Emboss::ajFeattableCopy;
*ajFeattableTrace = *Bio::Emboss::ajFeattableTrace;
*ajFeattablePos = *Bio::Emboss::ajFeattablePos;
*ajFeattablePosI = *Bio::Emboss::ajFeattablePosI;
*ajFeattableTrimOff = *Bio::Emboss::ajFeattableTrimOff;
*ajFeatDefName = *Bio::Emboss::ajFeatDefName;
*ajFeattableCopyLimit = *Bio::Emboss::ajFeattableCopyLimit;
*embPatlistSeqSearch = *Bio::Emboss::embPatlistSeqSearch;
*embPatlistRegexSearch = *Bio::Emboss::embPatlistRegexSearch;
*embPatternRegexSearch = *Bio::Emboss::embPatternRegexSearch;
*embPatternSeqSearch = *Bio::Emboss::embPatternSeqSearch;
package Bio::Emboss::Feature;
*ajFeatDel = *Bio::Emboss::ajFeatDel;
*ajFeatGetNote = *Bio::Emboss::ajFeatGetNote;
*ajFeatGetNoteC = *Bio::Emboss::ajFeatGetNoteC;
*ajFeatGetNoteCI = *Bio::Emboss::ajFeatGetNoteCI;
*ajFeatGetNoteI = *Bio::Emboss::ajFeatGetNoteI;
*ajFeatGetTag = *Bio::Emboss::ajFeatGetTag;
*ajFeatGetType = *Bio::Emboss::ajFeatGetType;
*ajFeatGetSource = *Bio::Emboss::ajFeatGetSource;
*ajFeatGetStart = *Bio::Emboss::ajFeatGetStart;
*ajFeatGetStrand = *Bio::Emboss::ajFeatGetStrand;
*ajFeatGetEnd = *Bio::Emboss::ajFeatGetEnd;
*ajFeatGetLength = *Bio::Emboss::ajFeatGetLength;
*ajFeatGetScore = *Bio::Emboss::ajFeatGetScore;
*ajFeatGetForward = *Bio::Emboss::ajFeatGetForward;
*ajFeatGetFrame = *Bio::Emboss::ajFeatGetFrame;
*ajFeatSetDescApp = *Bio::Emboss::ajFeatSetDescApp;
*ajFeatSetDesc = *Bio::Emboss::ajFeatSetDesc;
*ajFeatSetScore = *Bio::Emboss::ajFeatSetScore;
*ajFeatSetStrand = *Bio::Emboss::ajFeatSetStrand;
*ajFeatTagSetC = *Bio::Emboss::ajFeatTagSetC;
*ajFeatTagSet = *Bio::Emboss::ajFeatTagSet;
*ajFeatTagAddCC = *Bio::Emboss::ajFeatTagAddCC;
*ajFeatTagAddC = *Bio::Emboss::ajFeatTagAddC;
*ajFeatTagAdd = *Bio::Emboss::ajFeatTagAdd;
*ajFeatReverse = *Bio::Emboss::ajFeatReverse;
*ajFeatCopy = *Bio::Emboss::ajFeatCopy;
*ajFeatTrace = *Bio::Emboss::ajFeatTrace;
*ajFeatTagTrace = *Bio::Emboss::ajFeatTagTrace;
*ajFeatTagIter = *Bio::Emboss::ajFeatTagIter;
*ajFeatIsLocal = *Bio::Emboss::ajFeatIsLocal;
*ajFeatIsLocalRange = *Bio::Emboss::ajFeatIsLocalRange;
*ajFeatIsChild = *Bio::Emboss::ajFeatIsChild;
*ajFeatIsMultiple = *Bio::Emboss::ajFeatIsMultiple;
*ajFeatIsCompMult = *Bio::Emboss::ajFeatIsCompMult;
*ajFeatTrimOffRange = *Bio::Emboss::ajFeatTrimOffRange;
package Bio::Emboss::File;
*ajAcdPrintAppl = *Bio::Emboss::ajAcdPrintAppl;
*ajAcdPrintQual = *Bio::Emboss::ajAcdPrintQual;
*ajAcdPrintType = *Bio::Emboss::ajAcdPrintType;
*ajAlignPrintFormat = *Bio::Emboss::ajAlignPrintFormat;
*ajCodPrintFormat = *Bio::Emboss::ajCodPrintFormat;
*ajDmxScopalgRead = *Bio::Emboss::ajDmxScopalgRead;
*ajDmxScophitsWrite = *Bio::Emboss::ajDmxScophitsWrite;
*ajDmxScophitsWriteFasta = *Bio::Emboss::ajDmxScophitsWriteFasta;
*ajDmxScophitReadFasta = *Bio::Emboss::ajDmxScophitReadFasta;
*ajCathReadAllNew = *Bio::Emboss::ajCathReadAllNew;
*ajCathReadAllRawNew = *Bio::Emboss::ajCathReadAllRawNew;
*ajCathReadCNew = *Bio::Emboss::ajCathReadCNew;
*ajCathReadNew = *Bio::Emboss::ajCathReadNew;
*ajDomainReadAllNew = *Bio::Emboss::ajDomainReadAllNew;
*ajScopReadAllNew = *Bio::Emboss::ajScopReadAllNew;
*ajScopReadAllRawNew = *Bio::Emboss::ajScopReadAllRawNew;
*ajDomainReadNew = *Bio::Emboss::ajDomainReadNew;
*ajScopReadNew = *Bio::Emboss::ajScopReadNew;
*ajDomainReadCNew = *Bio::Emboss::ajDomainReadCNew;
*ajScopReadCNew = *Bio::Emboss::ajScopReadCNew;
*ajPdbWriteDomain = *Bio::Emboss::ajPdbWriteDomain;
*ajCathWrite = *Bio::Emboss::ajCathWrite;
*ajDomainWrite = *Bio::Emboss::ajDomainWrite;
*ajScopWrite = *Bio::Emboss::ajScopWrite;
*ajDomainDCFType = *Bio::Emboss::ajDomainDCFType;
*ajFeatPrintFormat = *Bio::Emboss::ajFeatPrintFormat;
*ajFileClose = *Bio::Emboss::ajFileClose;
*ajFileOutClose = *Bio::Emboss::ajFileOutClose;
*ajFileSeek = *Bio::Emboss::ajFileSeek;
*ajFileReadUint = *Bio::Emboss::ajFileReadUint;
*ajFileWrite = *Bio::Emboss::ajFileWrite;
*ajFileNext = *Bio::Emboss::ajFileNext;
*ajFileReopen = *Bio::Emboss::ajFileReopen;
*ajFileReadLine = *Bio::Emboss::ajFileReadLine;
*ajFileGetsTrimL = *Bio::Emboss::ajFileGetsTrimL;
*ajFileGetsTrim = *Bio::Emboss::ajFileGetsTrim;
*ajFileGets = *Bio::Emboss::ajFileGets;
*ajFileGetsL = *Bio::Emboss::ajFileGetsL;
*ajFileUnbuffer = *Bio::Emboss::ajFileUnbuffer;
*ajFileReadAppend = *Bio::Emboss::ajFileReadAppend;
*ajFileOutHeader = *Bio::Emboss::ajFileOutHeader;
*ajFileTrace = *Bio::Emboss::ajFileTrace;
*ajFileName = *Bio::Emboss::ajFileName;
*ajFileNameS = *Bio::Emboss::ajFileNameS;
*ajFileGetApp = *Bio::Emboss::ajFileGetApp;
*ajFileGetName = *Bio::Emboss::ajFileGetName;
*ajFileTell = *Bio::Emboss::ajFileTell;
*ajFileStdout = *Bio::Emboss::ajFileStdout;
*ajFileStderr = *Bio::Emboss::ajFileStderr;
*ajFileStdin = *Bio::Emboss::ajFileStdin;
*ajFileFp = *Bio::Emboss::ajFileFp;
*ajFileEof = *Bio::Emboss::ajFileEof;
*ajFileBuffNewFile = *Bio::Emboss::ajFileBuffNewFile;
*ajFileWriteByte = *Bio::Emboss::ajFileWriteByte;
*ajFileWriteChar = *Bio::Emboss::ajFileWriteChar;
*ajFileWriteInt2 = *Bio::Emboss::ajFileWriteInt2;
*ajFileWriteInt4 = *Bio::Emboss::ajFileWriteInt4;
*ajFileWriteInt8 = *Bio::Emboss::ajFileWriteInt8;
*ajFileWriteStr = *Bio::Emboss::ajFileWriteStr;
*ajFmtPrintF = *Bio::Emboss::ajFmtPrintF;
*ajFmtPrintSplit = *Bio::Emboss::ajFmtPrintSplit;
*ajFmtScanF = *Bio::Emboss::ajFmtScanF;
*ajGraphPrintType = *Bio::Emboss::ajGraphPrintType;
*ajNamPrintDbAttr = *Bio::Emboss::ajNamPrintDbAttr;
*ajNamPrintRsAttr = *Bio::Emboss::ajNamPrintRsAttr;
*ajPdbtospReadAllRawNew = *Bio::Emboss::ajPdbtospReadAllRawNew;
*ajPdbtospReadNew = *Bio::Emboss::ajPdbtospReadNew;
*ajPdbtospReadCNew = *Bio::Emboss::ajPdbtospReadCNew;
*ajPdbtospReadAllNew = *Bio::Emboss::ajPdbtospReadAllNew;
*ajCmapReadINew = *Bio::Emboss::ajCmapReadINew;
*ajCmapReadCNew = *Bio::Emboss::ajCmapReadCNew;
*ajCmapReadAllNew = *Bio::Emboss::ajCmapReadAllNew;
*ajCmapReadNew = *Bio::Emboss::ajCmapReadNew;
*ajVdwallReadNew = *Bio::Emboss::ajVdwallReadNew;
*ajHetReadNew = *Bio::Emboss::ajHetReadNew;
*ajHetReadRawNew = *Bio::Emboss::ajHetReadRawNew;
*ajPdbReadFirstModelNew = *Bio::Emboss::ajPdbReadFirstModelNew;
*ajPdbReadAllModelsNew = *Bio::Emboss::ajPdbReadAllModelsNew;
*ajPdbReadNew = *Bio::Emboss::ajPdbReadNew;
*ajPdbReadoldNew = *Bio::Emboss::ajPdbReadoldNew;
*ajPdbReadoldFirstModelNew = *Bio::Emboss::ajPdbReadoldFirstModelNew;
*ajPdbWriteAll = *Bio::Emboss::ajPdbWriteAll;
*ajPdbWriteSegment = *Bio::Emboss::ajPdbWriteSegment;
*ajHetWrite = *Bio::Emboss::ajHetWrite;
*ajPdbtospWrite = *Bio::Emboss::ajPdbtospWrite;
*ajCmapWrite = *Bio::Emboss::ajCmapWrite;
*ajReportPrintFormat = *Bio::Emboss::ajReportPrintFormat;
*ajSeqABITest = *Bio::Emboss::ajSeqABITest;
*ajSeqABIReadSeq = *Bio::Emboss::ajSeqABIReadSeq;
*ajSeqABIMachineName = *Bio::Emboss::ajSeqABIMachineName;
*ajSeqABIGetNData = *Bio::Emboss::ajSeqABIGetNData;
*ajSeqABIGetNBase = *Bio::Emboss::ajSeqABIGetNBase;
*ajSeqABIGetData = *Bio::Emboss::ajSeqABIGetData;
*ajSeqABIGetBasePosition = *Bio::Emboss::ajSeqABIGetBasePosition;
*ajSeqABIGetSignal = *Bio::Emboss::ajSeqABIGetSignal;
*ajSeqABIGetBaseSpace = *Bio::Emboss::ajSeqABIGetBaseSpace;
*ajSeqABIGetBaseOffset = *Bio::Emboss::ajSeqABIGetBaseOffset;
*ajSeqABIGetBasePosOffset = *Bio::Emboss::ajSeqABIGetBasePosOffset;
*ajSeqABIGetFWO = *Bio::Emboss::ajSeqABIGetFWO;
*ajSeqABIGetPrimerOffset = *Bio::Emboss::ajSeqABIGetPrimerOffset;
*ajSeqABIGetPrimerPosition = *Bio::Emboss::ajSeqABIGetPrimerPosition;
*ajSeqABIGetTraceOffset = *Bio::Emboss::ajSeqABIGetTraceOffset;
*ajSeqABISampleName = *Bio::Emboss::ajSeqABISampleName;
*ajSeqPrintAccess = *Bio::Emboss::ajSeqPrintAccess;
*ajSeqPrintInFormat = *Bio::Emboss::ajSeqPrintInFormat;
*ajSeqPrintType = *Bio::Emboss::ajSeqPrintType;
*ajSeqoutNewFile = *Bio::Emboss::ajSeqoutNewFile;
*ajSeqoutPrintFormat = *Bio::Emboss::ajSeqoutPrintFormat;
*embComWriteFile = *Bio::Emboss::embComWriteFile;
*embComWriteValueOfSeq = *Bio::Emboss::embComWriteValueOfSeq;
*embDbiHeaderSize = *Bio::Emboss::embDbiHeaderSize;
*embDbiHeader = *Bio::Emboss::embDbiHeader;
*embDbiWriteDivisionRecord = *Bio::Emboss::embDbiWriteDivisionRecord;
*embDbiWriteEntryRecord = *Bio::Emboss::embDbiWriteEntryRecord;
*embDbiWriteHit = *Bio::Emboss::embDbiWriteHit;
*embDbiWriteTrg = *Bio::Emboss::embDbiWriteTrg;
*embDbiSortOpen = *Bio::Emboss::embDbiSortOpen;
*embDbiSortClose = *Bio::Emboss::embDbiSortClose;
*embDbiSortWriteEntry = *Bio::Emboss::embDbiSortWriteEntry;
*embDbiMemWriteEntry = *Bio::Emboss::embDbiMemWriteEntry;
*embDbiLogHeader = *Bio::Emboss::embDbiLogHeader;
*embDbiLogFields = *Bio::Emboss::embDbiLogFields;
*embDbiLogSource = *Bio::Emboss::embDbiLogSource;
*embDbiLogCmdline = *Bio::Emboss::embDbiLogCmdline;
*embDbiLogFile = *Bio::Emboss::embDbiLogFile;
*embDbiLogFinal = *Bio::Emboss::embDbiLogFinal;
*embDmxHitsWrite = *Bio::Emboss::embDmxHitsWrite;
*embDmxScophitReadAllFasta = *Bio::Emboss::embDmxScophitReadAllFasta;
*embEstPrintAlign = *Bio::Emboss::embEstPrintAlign;
*embEstOutBlastStyle = *Bio::Emboss::embEstOutBlastStyle;
*embGrpOutputGroupsList = *Bio::Emboss::embGrpOutputGroupsList;
*embGrpOutputProgsList = *Bio::Emboss::embGrpOutputProgsList;
*embMatPrintsInit = *Bio::Emboss::embMatPrintsInit;
*embMatProtReadInt = *Bio::Emboss::embMatProtReadInt;
*embPropAminoRead = *Bio::Emboss::embPropAminoRead;
*embShowPrint = *Bio::Emboss::embShowPrint;
*embWordMatchListPrint = *Bio::Emboss::embWordMatchListPrint;
*ajSeqPrintOutFormat = *Bio::Emboss::ajSeqPrintOutFormat;
*ajSeqWriteXyz = *Bio::Emboss::ajSeqWriteXyz;
*ajSssWriteXyz = *Bio::Emboss::ajSssWriteXyz;
package Bio::Emboss::FileBuff;
*ajFileBuffSetFile = *Bio::Emboss::ajFileBuffSetFile;
*ajFileBuffDel = *Bio::Emboss::ajFileBuffDel;
*ajFileBuffGet = *Bio::Emboss::ajFileBuffGet;
*ajFileBuffGetStore = *Bio::Emboss::ajFileBuffGetStore;
*ajFileBuffGetStoreL = *Bio::Emboss::ajFileBuffGetStoreL;
*ajFileBuffGetL = *Bio::Emboss::ajFileBuffGetL;
*ajFileBuffStripHtml = *Bio::Emboss::ajFileBuffStripHtml;
*ajFileBuffLoadC = *Bio::Emboss::ajFileBuffLoadC;
*ajFileBuffLoadS = *Bio::Emboss::ajFileBuffLoadS;
*ajFileBuffEof = *Bio::Emboss::ajFileBuffEof;
*ajFileBuffEnd = *Bio::Emboss::ajFileBuffEnd;
*ajFileBuffReset = *Bio::Emboss::ajFileBuffReset;
*ajFileBuffResetStore = *Bio::Emboss::ajFileBuffResetStore;
*ajFileBuffResetPos = *Bio::Emboss::ajFileBuffResetPos;
*ajFileBuffFix = *Bio::Emboss::ajFileBuffFix;
*ajFileBuffFreeClear = *Bio::Emboss::ajFileBuffFreeClear;
*ajFileBuffClear = *Bio::Emboss::ajFileBuffClear;
*ajFileBuffClearStore = *Bio::Emboss::ajFileBuffClearStore;
*ajFileBuffNobuff = *Bio::Emboss::ajFileBuffNobuff;
*ajFileBuffBuff = *Bio::Emboss::ajFileBuffBuff;
*ajFileBuffEmpty = *Bio::Emboss::ajFileBuffEmpty;
*ajFileBuffTrace = *Bio::Emboss::ajFileBuffTrace;
*ajFileBuffTraceFull = *Bio::Emboss::ajFileBuffTraceFull;
*ajFileBuffPrint = *Bio::Emboss::ajFileBuffPrint;
*ajFileBuffIsBuffered = *Bio::Emboss::ajFileBuffIsBuffered;
*ajFileBuffFp = *Bio::Emboss::ajFileBuffFp;
*ajFileBuffFile = *Bio::Emboss::ajFileBuffFile;
*ajFileBuffLoad = *Bio::Emboss::ajFileBuffLoad;
*ajFileBuffStripHtmlPre = *Bio::Emboss::ajFileBuffStripHtmlPre;
*ajFileBuffGetTrim = *Bio::Emboss::ajFileBuffGetTrim;
*ajNexusParse = *Bio::Emboss::ajNexusParse;
package Bio::Emboss::Float;
*ajFloatDel = *Bio::Emboss::ajFloatDel;
*ajFloatGet = *Bio::Emboss::ajFloatGet;
*ajFloatPut = *Bio::Emboss::ajFloatPut;
*ajFloatFloat = *Bio::Emboss::ajFloatFloat;
*ajFloatLen = *Bio::Emboss::ajFloatLen;
*ajFloatStr = *Bio::Emboss::ajFloatStr;
*ajFloatTrace = *Bio::Emboss::ajFloatTrace;
package Bio::Emboss::Float2d;
*ajFloat2dDel = *Bio::Emboss::ajFloat2dDel;
*ajFloat2dGet = *Bio::Emboss::ajFloat2dGet;
*ajFloat2dPut = *Bio::Emboss::ajFloat2dPut;
*ajFloat2dLen = *Bio::Emboss::ajFloat2dLen;
*ajFloat2dFloat = *Bio::Emboss::ajFloat2dFloat;
package Bio::Emboss::Float3d;
*ajFloat3dDel = *Bio::Emboss::ajFloat3dDel;
*ajFloat3dGet = *Bio::Emboss::ajFloat3dGet;
*ajFloat3dPut = *Bio::Emboss::ajFloat3dPut;
*ajFloat3dLen = *Bio::Emboss::ajFloat3dLen;
*ajFloat3dFloat = *Bio::Emboss::ajFloat3dFloat;
package Bio::Emboss::Graph;
*ajGraphSetDevice = *Bio::Emboss::ajGraphSetDevice;
*ajGraphSetName = *Bio::Emboss::ajGraphSetName;
*ajGraphOpenPlot = *Bio::Emboss::ajGraphOpenPlot;
*ajGraphOpenWin = *Bio::Emboss::ajGraphOpenWin;
*ajGraphNewPage = *Bio::Emboss::ajGraphNewPage;
*ajGraphOpen = *Bio::Emboss::ajGraphOpen;
*ajGraphSet = *Bio::Emboss::ajGraphSet;
*ajGraphxySet = *Bio::Emboss::ajGraphxySet;
*ajGraphTrace = *Bio::Emboss::ajGraphTrace;
*ajGraphGetSubTitle = *Bio::Emboss::ajGraphGetSubTitle;
*ajGraphGetSubTitleC = *Bio::Emboss::ajGraphGetSubTitleC;
*ajGraphGetTitle = *Bio::Emboss::ajGraphGetTitle;
*ajGraphGetTitleC = *Bio::Emboss::ajGraphGetTitleC;
*ajGraphGetXTitle = *Bio::Emboss::ajGraphGetXTitle;
*ajGraphGetXTitleC = *Bio::Emboss::ajGraphGetXTitleC;
*ajGraphGetYTitle = *Bio::Emboss::ajGraphGetYTitle;
*ajGraphGetYTitleC = *Bio::Emboss::ajGraphGetYTitleC;
*ajGraphInitSeq = *Bio::Emboss::ajGraphInitSeq;
*ajGraphSetOut = *Bio::Emboss::ajGraphSetOut;
*ajGraphSetOutC = *Bio::Emboss::ajGraphSetOutC;
*ajGraphSetDir = *Bio::Emboss::ajGraphSetDir;
*ajGraphxySetXStart = *Bio::Emboss::ajGraphxySetXStart;
*ajGraphxySetXEnd = *Bio::Emboss::ajGraphxySetXEnd;
*ajGraphxySetYStart = *Bio::Emboss::ajGraphxySetYStart;
*ajGraphxySetYEnd = *Bio::Emboss::ajGraphxySetYEnd;
*ajGraphSetYTitle = *Bio::Emboss::ajGraphSetYTitle;
*ajGraphSetYTitleC = *Bio::Emboss::ajGraphSetYTitleC;
*ajGraphSetXTitle = *Bio::Emboss::ajGraphSetXTitle;
*ajGraphSetXTitleC = *Bio::Emboss::ajGraphSetXTitleC;
*ajGraphSetTitle = *Bio::Emboss::ajGraphSetTitle;
*ajGraphSetTitleC = *Bio::Emboss::ajGraphSetTitleC;
*ajGraphSetSubTitle = *Bio::Emboss::ajGraphSetSubTitle;
*ajGraphSetSubTitleC = *Bio::Emboss::ajGraphSetSubTitleC;
*ajGraphxyDel = *Bio::Emboss::ajGraphxyDel;
*ajGraphxySetXRangeII = *Bio::Emboss::ajGraphxySetXRangeII;
*ajGraphxySetYRangeII = *Bio::Emboss::ajGraphxySetYRangeII;
*ajGraphDataAdd = *Bio::Emboss::ajGraphDataAdd;
*ajGraphDataReplace = *Bio::Emboss::ajGraphDataReplace;
*ajGraphSetMulti = *Bio::Emboss::ajGraphSetMulti;
*ajGraphSetFlag = *Bio::Emboss::ajGraphSetFlag;
*ajGraphxySetOverLap = *Bio::Emboss::ajGraphxySetOverLap;
*ajGraphxySetGaps = *Bio::Emboss::ajGraphxySetGaps;
*ajGraphxySetXBottom = *Bio::Emboss::ajGraphxySetXBottom;
*ajGraphxySetXTop = *Bio::Emboss::ajGraphxySetXTop;
*ajGraphxySetYRight = *Bio::Emboss::ajGraphxySetYRight;
*ajGraphxySetYLeft = *Bio::Emboss::ajGraphxySetYLeft;
*ajGraphxySetXTick = *Bio::Emboss::ajGraphxySetXTick;
*ajGraphxySetYTick = *Bio::Emboss::ajGraphxySetYTick;
*ajGraphxySetXLabel = *Bio::Emboss::ajGraphxySetXLabel;
*ajGraphxySetYLabel = *Bio::Emboss::ajGraphxySetYLabel;
*ajGraphSetTitleDo = *Bio::Emboss::ajGraphSetTitleDo;
*ajGraphSetSubTitleDo = *Bio::Emboss::ajGraphSetSubTitleDo;
*ajGraphxySetCirclePoints = *Bio::Emboss::ajGraphxySetCirclePoints;
*ajGraphxySetJoinPoints = *Bio::Emboss::ajGraphxySetJoinPoints;
*ajGraphxySetXLabelTop = *Bio::Emboss::ajGraphxySetXLabelTop;
*ajGraphxySetYLabelLeft = *Bio::Emboss::ajGraphxySetYLabelLeft;
*ajGraphxySetXInvTicks = *Bio::Emboss::ajGraphxySetXInvTicks;
*ajGraphxySetYInvTicks = *Bio::Emboss::ajGraphxySetYInvTicks;
*ajGraphxySetXGrid = *Bio::Emboss::ajGraphxySetXGrid;
*ajGraphxySetYGrid = *Bio::Emboss::ajGraphxySetYGrid;
*ajGraphxySetMaxMin = *Bio::Emboss::ajGraphxySetMaxMin;
*ajGraphxyCheckMaxMin = *Bio::Emboss::ajGraphxyCheckMaxMin;
*ajGraphxyDisplay = *Bio::Emboss::ajGraphxyDisplay;
*ajGraphAddRect = *Bio::Emboss::ajGraphAddRect;
*ajGraphAddText = *Bio::Emboss::ajGraphAddText;
*ajGraphAddLine = *Bio::Emboss::ajGraphAddLine;
*ajGraphClear = *Bio::Emboss::ajGraphClear;
*ajGraphIsData = *Bio::Emboss::ajGraphIsData;
*ajGraphSetDesc = *Bio::Emboss::ajGraphSetDesc;
*ajGraphSetTitlePlus = *Bio::Emboss::ajGraphSetTitlePlus;
*ajGraphDataReplaceI = *Bio::Emboss::ajGraphDataReplaceI;
*ajGraphAddTextScale = *Bio::Emboss::ajGraphAddTextScale;
package Bio::Emboss::GraphPlpData;
*ajGraphPlpDataTrace = *Bio::Emboss::ajGraphPlpDataTrace;
*ajGraphPlpDataSetLineType = *Bio::Emboss::ajGraphPlpDataSetLineType;
*ajGraphPlpDataSetColour = *Bio::Emboss::ajGraphPlpDataSetColour;
*ajGraphPlpDataSetYTitle = *Bio::Emboss::ajGraphPlpDataSetYTitle;
*ajGraphPlpDataSetYTitleC = *Bio::Emboss::ajGraphPlpDataSetYTitleC;
*ajGraphPlpDataSetXTitle = *Bio::Emboss::ajGraphPlpDataSetXTitle;
*ajGraphPlpDataSetXTitleC = *Bio::Emboss::ajGraphPlpDataSetXTitleC;
*ajGraphPlpDataSetXY = *Bio::Emboss::ajGraphPlpDataSetXY;
*ajGraphPlpDataCalcXY = *Bio::Emboss::ajGraphPlpDataCalcXY;
*ajGraphPlpDataSetTitle = *Bio::Emboss::ajGraphPlpDataSetTitle;
*ajGraphPlpDataSetTitleC = *Bio::Emboss::ajGraphPlpDataSetTitleC;
*ajGraphPlpDataSetSubTitle = *Bio::Emboss::ajGraphPlpDataSetSubTitle;
*ajGraphPlpDataSetSubTitleC = *Bio::Emboss::ajGraphPlpDataSetSubTitleC;
*ajGraphPlpDataSetMaxMin = *Bio::Emboss::ajGraphPlpDataSetMaxMin;
*ajGraphPlpDataSetMaxima = *Bio::Emboss::ajGraphPlpDataSetMaxima;
*ajGraphPlpDataSetTypeC = *Bio::Emboss::ajGraphPlpDataSetTypeC;
*ajGraphPlpDataDel = *Bio::Emboss::ajGraphPlpDataDel;
*ajGraphPlpDataAddRect = *Bio::Emboss::ajGraphPlpDataAddRect;
*ajGraphPlpDataAddText = *Bio::Emboss::ajGraphPlpDataAddText;
*ajGraphPlpDataAddLine = *Bio::Emboss::ajGraphPlpDataAddLine;
*ajGraphPlpDataAddTextScale = *Bio::Emboss::ajGraphPlpDataAddTextScale;
package Bio::Emboss::Het;
*ajHetDel = *Bio::Emboss::ajHetDel;
package Bio::Emboss::Hetent;
*ajHetentDel = *Bio::Emboss::ajHetentDel;
package Bio::Emboss::Hist;
*ajHistDisplay = *Bio::Emboss::ajHistDisplay;
*ajHistDelete = *Bio::Emboss::ajHistDelete;
*ajHistSetMultiTitle = *Bio::Emboss::ajHistSetMultiTitle;
*ajHistSetMultiTitleC = *Bio::Emboss::ajHistSetMultiTitleC;
*ajHistSetMultiXTitle = *Bio::Emboss::ajHistSetMultiXTitle;
*ajHistSetMultiXTitleC = *Bio::Emboss::ajHistSetMultiXTitleC;
*ajHistSetMultiYTitle = *Bio::Emboss::ajHistSetMultiYTitle;
*ajHistSetMultiYTitleC = *Bio::Emboss::ajHistSetMultiYTitleC;
*ajHistSetPtrToData = *Bio::Emboss::ajHistSetPtrToData;
*ajHistCopyData = *Bio::Emboss::ajHistCopyData;
*ajHistSetTitleC = *Bio::Emboss::ajHistSetTitleC;
*ajHistSetXAxisC = *Bio::Emboss::ajHistSetXAxisC;
*ajHistSetYAxisLeftC = *Bio::Emboss::ajHistSetYAxisLeftC;
*ajHistSetYAxisRightC = *Bio::Emboss::ajHistSetYAxisRightC;
*ajHistSetBlackandWhite = *Bio::Emboss::ajHistSetBlackandWhite;
*ajHistSetColour = *Bio::Emboss::ajHistSetColour;
*ajHistSetPattern = *Bio::Emboss::ajHistSetPattern;
package Bio::Emboss::Int;
*ajIntDel = *Bio::Emboss::ajIntDel;
*ajIntGet = *Bio::Emboss::ajIntGet;
*ajIntPut = *Bio::Emboss::ajIntPut;
*ajIntInc = *Bio::Emboss::ajIntInc;
*ajIntDec = *Bio::Emboss::ajIntDec;
*ajIntInt = *Bio::Emboss::ajIntInt;
*ajIntLen = *Bio::Emboss::ajIntLen;
package Bio::Emboss::Int2d;
*ajInt2dDel = *Bio::Emboss::ajInt2dDel;
*ajInt2dGet = *Bio::Emboss::ajInt2dGet;
*ajInt2dPut = *Bio::Emboss::ajInt2dPut;
*ajInt2dLen = *Bio::Emboss::ajInt2dLen;
*ajInt2dInt = *Bio::Emboss::ajInt2dInt;
package Bio::Emboss::Int3d;
*ajInt3dDel = *Bio::Emboss::ajInt3dDel;
*ajInt3dGet = *Bio::Emboss::ajInt3dGet;
*ajInt3dPut = *Bio::Emboss::ajInt3dPut;
*ajInt3dLen = *Bio::Emboss::ajInt3dLen;
*ajInt3dInt = *Bio::Emboss::ajInt3dInt;
package Bio::Emboss::List;
*ajDmxScophitListCopy = *Bio::Emboss::ajDmxScophitListCopy;
*ajFileNewInList = *Bio::Emboss::ajFileNewInList;
*ajFileBuffNewInList = *Bio::Emboss::ajFileBuffNewInList;
*ajGraphInfo = *Bio::Emboss::ajGraphInfo;
*ajListPush = *Bio::Emboss::ajListPush;
*ajListstrPush = *Bio::Emboss::ajListstrPush;
*ajListTrace = *Bio::Emboss::ajListTrace;
*ajListstrTrace = *Bio::Emboss::ajListstrTrace;
*ajListPop = *Bio::Emboss::ajListPop;
*ajListPeek = *Bio::Emboss::ajListPeek;
*ajListstrPop = *Bio::Emboss::ajListstrPop;
*ajListstrPeek = *Bio::Emboss::ajListstrPeek;
*ajListReverse = *Bio::Emboss::ajListReverse;
*ajListstrReverse = *Bio::Emboss::ajListstrReverse;
*ajListFree = *Bio::Emboss::ajListFree;
*ajListstrFree = *Bio::Emboss::ajListstrFree;
*ajListFreeData = *Bio::Emboss::ajListFreeData;
*ajListNewListref = *Bio::Emboss::ajListNewListref;
*ajListPushAppend = *Bio::Emboss::ajListPushAppend;
*ajListPushlist = *Bio::Emboss::ajListPushlist;
*ajListPopLast = *Bio::Emboss::ajListPopLast;
*ajListGetLength = *Bio::Emboss::ajListGetLength;
*ajListPeekFirst = *Bio::Emboss::ajListPeekFirst;
*ajListPeekLast = *Bio::Emboss::ajListPeekLast;
*ajListPeekNumber = *Bio::Emboss::ajListPeekNumber;
*ajListToarray = *Bio::Emboss::ajListToarray;
*ajListIterNew = *Bio::Emboss::ajListIterNew;
*ajListIterNewBack = *Bio::Emboss::ajListIterNewBack;
*ajListIterNewread = *Bio::Emboss::ajListIterNewread;
*ajListIterNewreadBack = *Bio::Emboss::ajListIterNewreadBack;
*ajListstrNewList = *Bio::Emboss::ajListstrNewList;
*ajListstrNewListref = *Bio::Emboss::ajListstrNewListref;
*ajListstrPushAppend = *Bio::Emboss::ajListstrPushAppend;
*ajListstrPushlist = *Bio::Emboss::ajListstrPushlist;
*ajListstrPopLast = *Bio::Emboss::ajListstrPopLast;
*ajListstrGetLength = *Bio::Emboss::ajListstrGetLength;
*ajListstrToarray = *Bio::Emboss::ajListstrToarray;
*ajListstrToarrayAppend = *Bio::Emboss::ajListstrToarrayAppend;
*ajListstrFreeData = *Bio::Emboss::ajListstrFreeData;
*ajNamListListDatabases = *Bio::Emboss::ajNamListListDatabases;
*ajNamListListResources = *Bio::Emboss::ajNamListListResources;
*ajAtomListCopy = *Bio::Emboss::ajAtomListCopy;
*ajResidueListCopy = *Bio::Emboss::ajResidueListCopy;
*ajSeqreflistClone = *Bio::Emboss::ajSeqreflistClone;
*ajSeqsetallRead = *Bio::Emboss::ajSeqsetallRead;
*embDataListDel = *Bio::Emboss::embDataListDel;
*embDataListRead = *Bio::Emboss::embDataListRead;
*embDataListGetTables = *Bio::Emboss::embDataListGetTables;
*embDataListGetTable = *Bio::Emboss::embDataListGetTable;
*embDbiMemEntry = *Bio::Emboss::embDbiMemEntry;
*embDmxScophitsToHitlist = *Bio::Emboss::embDmxScophitsToHitlist;
*embDmxScophitsAccToHitlist = *Bio::Emboss::embDmxScophitsAccToHitlist;
*embDmxScophitMergeInsertOther = *Bio::Emboss::embDmxScophitMergeInsertOther;
*embDmxScophitMergeInsertOtherTarget = *Bio::Emboss::embDmxScophitMergeInsertOtherTarget;
*embDmxScophitMergeInsertOtherTargetBoth = *Bio::Emboss::embDmxScophitMergeInsertOtherTargetBoth;
*embDmxScophitMergeInsertThis = *Bio::Emboss::embDmxScophitMergeInsertThis;
*embDmxScophitMergeInsertThisTarget = *Bio::Emboss::embDmxScophitMergeInsertThisTarget;
*embDmxScophitMergeInsertThisTargetBoth = *Bio::Emboss::embDmxScophitMergeInsertThisTargetBoth;
*embDmxSeqNR = *Bio::Emboss::embDmxSeqNR;
*embDmxSeqNRRange = *Bio::Emboss::embDmxSeqNRRange;
*embDmxSeqCompall = *Bio::Emboss::embDmxSeqCompall;
*embDmxHitlistToScophits = *Bio::Emboss::embDmxHitlistToScophits;
*embGrpSortGroupsList = *Bio::Emboss::embGrpSortGroupsList;
*embGrpSortProgsList = *Bio::Emboss::embGrpSortProgsList;
*embGrpGroupsListDel = *Bio::Emboss::embGrpGroupsListDel;
*embGrpProgsListDel = *Bio::Emboss::embGrpProgsListDel;
*embGrpKeySearchProgs = *Bio::Emboss::embGrpKeySearchProgs;
*embGrpKeySearchSeeAlso = *Bio::Emboss::embGrpKeySearchSeeAlso;
*embGrpProgsMakeUnique = *Bio::Emboss::embGrpProgsMakeUnique;
*embGrpGroupMakeUnique = *Bio::Emboss::embGrpGroupMakeUnique;
*embWordMatchListDelete = *Bio::Emboss::embWordMatchListDelete;
*embWordMatchListConvToFeat = *Bio::Emboss::embWordMatchListConvToFeat;
*embWordMatchMin = *Bio::Emboss::embWordMatchMin;
*ajListAppend = *Bio::Emboss::ajListAppend;
*ajListPushApp = *Bio::Emboss::ajListPushApp;
*ajListstrPushApp = *Bio::Emboss::ajListstrPushApp;
*ajListstrCopy = *Bio::Emboss::ajListstrCopy;
*ajListCopy = *Bio::Emboss::ajListCopy;
*ajListstrClone = *Bio::Emboss::ajListstrClone;
*ajListFirst = *Bio::Emboss::ajListFirst;
*ajListLast = *Bio::Emboss::ajListLast;
*ajListLength = *Bio::Emboss::ajListLength;
*ajListstrLength = *Bio::Emboss::ajListstrLength;
*ajListDel = *Bio::Emboss::ajListDel;
*ajListstrDel = *Bio::Emboss::ajListstrDel;
*ajListToArray = *Bio::Emboss::ajListToArray;
*ajListstrToArray = *Bio::Emboss::ajListstrToArray;
*ajListstrToArrayApp = *Bio::Emboss::ajListstrToArrayApp;
*ajListIter = *Bio::Emboss::ajListIter;
*ajListIterRead = *Bio::Emboss::ajListIterRead;
*ajListIterBack = *Bio::Emboss::ajListIterBack;
*ajListIterBackRead = *Bio::Emboss::ajListIterBackRead;
*ajListPushList = *Bio::Emboss::ajListPushList;
*ajListstrPushList = *Bio::Emboss::ajListstrPushList;
*ajListPopEnd = *Bio::Emboss::ajListPopEnd;
*ajListstrPopEnd = *Bio::Emboss::ajListstrPopEnd;
package Bio::Emboss::Long;
*ajLongDel = *Bio::Emboss::ajLongDel;
*ajLongGet = *Bio::Emboss::ajLongGet;
*ajLongPut = *Bio::Emboss::ajLongPut;
*ajLongLong = *Bio::Emboss::ajLongLong;
*ajLongLen = *Bio::Emboss::ajLongLen;
package Bio::Emboss::Long2d;
*ajLong2dDel = *Bio::Emboss::ajLong2dDel;
*ajLong2dGet = *Bio::Emboss::ajLong2dGet;
*ajLong2dPut = *Bio::Emboss::ajLong2dPut;
*ajLong2dLen = *Bio::Emboss::ajLong2dLen;
*ajLong2dLong = *Bio::Emboss::ajLong2dLong;
package Bio::Emboss::Long3d;
*ajLong3dDel = *Bio::Emboss::ajLong3dDel;
*ajLong3dGet = *Bio::Emboss::ajLong3dGet;
*ajLong3dPut = *Bio::Emboss::ajLong3dPut;
*ajLong3dLen = *Bio::Emboss::ajLong3dLen;
*ajLong3dLong = *Bio::Emboss::ajLong3dLong;
package Bio::Emboss::Matrix;
*ajMatrixDel = *Bio::Emboss::ajMatrixDel;
*ajMatrixArray = *Bio::Emboss::ajMatrixArray;
*ajMatrixSize = *Bio::Emboss::ajMatrixSize;
*ajMatrixCvt = *Bio::Emboss::ajMatrixCvt;
*ajMatrixChar = *Bio::Emboss::ajMatrixChar;
*ajMatrixName = *Bio::Emboss::ajMatrixName;
*ajMatrixRead = *Bio::Emboss::ajMatrixRead;
*ajMatrixSeqNum = *Bio::Emboss::ajMatrixSeqNum;
*ajMatrixGetCodes = *Bio::Emboss::ajMatrixGetCodes;
package Bio::Emboss::Matrixf;
*ajMatrixfDel = *Bio::Emboss::ajMatrixfDel;
*ajMatrixfArray = *Bio::Emboss::ajMatrixfArray;
*ajMatrixfSize = *Bio::Emboss::ajMatrixfSize;
*ajMatrixfCvt = *Bio::Emboss::ajMatrixfCvt;
*ajMatrixfChar = *Bio::Emboss::ajMatrixfChar;
*ajMatrixfName = *Bio::Emboss::ajMatrixfName;
*ajMatrixfRead = *Bio::Emboss::ajMatrixfRead;
*ajMatrixfSeqNum = *Bio::Emboss::ajMatrixfSeqNum;
*ajMatrixfGetCodes = *Bio::Emboss::ajMatrixfGetCodes;
package Bio::Emboss::Nexus;
*ajNexusDel = *Bio::Emboss::ajNexusDel;
*ajNexusTrace = *Bio::Emboss::ajNexusTrace;
*ajNexusGetTaxa = *Bio::Emboss::ajNexusGetTaxa;
*ajNexusGetNtaxa = *Bio::Emboss::ajNexusGetNtaxa;
*ajNexusGetSequences = *Bio::Emboss::ajNexusGetSequences;
package Bio::Emboss::Outfile;
*ajOutfileClose = *Bio::Emboss::ajOutfileClose;
*ajOutfileDel = *Bio::Emboss::ajOutfileDel;
*ajOutfileFile = *Bio::Emboss::ajOutfileFile;
*ajOutfileFp = *Bio::Emboss::ajOutfileFp;
*ajOutfileFormat = *Bio::Emboss::ajOutfileFormat;
package Bio::Emboss::PStr;
*ajMatrixNew = *Bio::Emboss::ajMatrixNew;
*ajMatrixNewAsym = *Bio::Emboss::ajMatrixNewAsym;
*ajMatrixfNew = *Bio::Emboss::ajMatrixfNew;
*ajMatrixfNewAsym = *Bio::Emboss::ajMatrixfNewAsym;
*ajSeqcvtNewStr = *Bio::Emboss::ajSeqcvtNewStr;
*ajSeqcvtNewStrAsym = *Bio::Emboss::ajSeqcvtNewStrAsym;
*ajSeqCvtNewZeroS = *Bio::Emboss::ajSeqCvtNewZeroS;
*ajSeqCvtNewZeroSS = *Bio::Emboss::ajSeqCvtNewZeroSS;
package Bio::Emboss::PatternSeq;
*embPatternSeqCompile = *Bio::Emboss::embPatternSeqCompile;
package Bio::Emboss::Pdb;
*ajPdbDel = *Bio::Emboss::ajPdbDel;
*ajPdbCopy = *Bio::Emboss::ajPdbCopy;
*ajPdbGetEStrideType = *Bio::Emboss::ajPdbGetEStrideType;
*embPdbListHeterogens = *Bio::Emboss::embPdbListHeterogens;
*embPdbResidueIndexI = *Bio::Emboss::embPdbResidueIndexI;
*embPdbResidueIndexC = *Bio::Emboss::embPdbResidueIndexC;
*embPdbResidueIndexICA = *Bio::Emboss::embPdbResidueIndexICA;
*embPdbResidueIndexCCA = *Bio::Emboss::embPdbResidueIndexCCA;
package Bio::Emboss::Pdbtosp;
*ajPdbtospDel = *Bio::Emboss::ajPdbtospDel;
*ajPdbtospArrFindPdbid = *Bio::Emboss::ajPdbtospArrFindPdbid;
package Bio::Emboss::PhyloDist;
*ajPhyloDistDel = *Bio::Emboss::ajPhyloDistDel;
*ajPhyloDistTrace = *Bio::Emboss::ajPhyloDistTrace;
package Bio::Emboss::PhyloFreq;
*ajPhyloFreqDel = *Bio::Emboss::ajPhyloFreqDel;
*ajPhyloFreqTrace = *Bio::Emboss::ajPhyloFreqTrace;
package Bio::Emboss::PhyloProp;
*ajPhyloPropDel = *Bio::Emboss::ajPhyloPropDel;
*ajPhyloPropGetSize = *Bio::Emboss::ajPhyloPropGetSize;
*ajPhyloPropTrace = *Bio::Emboss::ajPhyloPropTrace;
package Bio::Emboss::PhyloState;
*ajPhyloStateDel = *Bio::Emboss::ajPhyloStateDel;
*ajPhyloStateTrace = *Bio::Emboss::ajPhyloStateTrace;
*ajPhyloStateDelarray = *Bio::Emboss::ajPhyloStateDelarray;
package Bio::Emboss::PhyloTree;
*ajPhyloTreeDel = *Bio::Emboss::ajPhyloTreeDel;
*ajPhyloTreeTrace = *Bio::Emboss::ajPhyloTreeTrace;
*ajPhyloTreeDelarray = *Bio::Emboss::ajPhyloTreeDelarray;
package Bio::Emboss::Range;
*ajRangeCopy = *Bio::Emboss::ajRangeCopy;
*ajRangeDel = *Bio::Emboss::ajRangeDel;
*ajRangeNumber = *Bio::Emboss::ajRangeNumber;
*ajRangeValues = *Bio::Emboss::ajRangeValues;
*ajRangeText = *Bio::Emboss::ajRangeText;
*ajRangeChange = *Bio::Emboss::ajRangeChange;
*ajRangeBegin = *Bio::Emboss::ajRangeBegin;
*ajRangeSeqExtractList = *Bio::Emboss::ajRangeSeqExtractList;
*ajRangeSeqExtract = *Bio::Emboss::ajRangeSeqExtract;
*ajRangeSeqStuff = *Bio::Emboss::ajRangeSeqStuff;
*ajRangeSeqMask = *Bio::Emboss::ajRangeSeqMask;
*ajRangeSeqToLower = *Bio::Emboss::ajRangeSeqToLower;
*ajRangeStrExtractList = *Bio::Emboss::ajRangeStrExtractList;
*ajRangeStrExtract = *Bio::Emboss::ajRangeStrExtract;
*ajRangeStrStuff = *Bio::Emboss::ajRangeStrStuff;
*ajRangeStrMask = *Bio::Emboss::ajRangeStrMask;
*ajRangeStrToLower = *Bio::Emboss::ajRangeStrToLower;
*ajRangeOverlaps = *Bio::Emboss::ajRangeOverlaps;
*ajRangeOrdered = *Bio::Emboss::ajRangeOrdered;
*ajRangeDefault = *Bio::Emboss::ajRangeDefault;
package Bio::Emboss::Regexp;
*ajRegExec = *Bio::Emboss::ajRegExec;
*ajRegExecC = *Bio::Emboss::ajRegExecC;
*ajRegOffset = *Bio::Emboss::ajRegOffset;
*ajRegOffsetI = *Bio::Emboss::ajRegOffsetI;
*ajRegLenI = *Bio::Emboss::ajRegLenI;
*ajRegPost = *Bio::Emboss::ajRegPost;
*ajRegPostC = *Bio::Emboss::ajRegPostC;
*ajRegPre = *Bio::Emboss::ajRegPre;
*ajRegSubI = *Bio::Emboss::ajRegSubI;
*ajRegFree = *Bio::Emboss::ajRegFree;
*ajRegTrace = *Bio::Emboss::ajRegTrace;
package Bio::Emboss::Report;
*ajReportDel = *Bio::Emboss::ajReportDel;
*ajReportOpen = *Bio::Emboss::ajReportOpen;
*ajReportSetTags = *Bio::Emboss::ajReportSetTags;
*ajReportValid = *Bio::Emboss::ajReportValid;
*ajReportWrite = *Bio::Emboss::ajReportWrite;
*ajReportClose = *Bio::Emboss::ajReportClose;
*ajReportLists = *Bio::Emboss::ajReportLists;
*ajReportWriteHeader = *Bio::Emboss::ajReportWriteHeader;
*ajReportWriteTail = *Bio::Emboss::ajReportWriteTail;
*ajReportSetHeader = *Bio::Emboss::ajReportSetHeader;
*ajReportSetHeaderC = *Bio::Emboss::ajReportSetHeaderC;
*ajReportSetSubHeader = *Bio::Emboss::ajReportSetSubHeader;
*ajReportSetSubHeaderC = *Bio::Emboss::ajReportSetSubHeaderC;
*ajReportSetTail = *Bio::Emboss::ajReportSetTail;
*ajReportSetTailC = *Bio::Emboss::ajReportSetTailC;
*ajReportSetSubTail = *Bio::Emboss::ajReportSetSubTail;
*ajReportSetSubTailC = *Bio::Emboss::ajReportSetSubTailC;
*ajReportSetType = *Bio::Emboss::ajReportSetType;
*ajReportSeqName = *Bio::Emboss::ajReportSeqName;
*ajReportFileAdd = *Bio::Emboss::ajReportFileAdd;
*ajReportAppendHeader = *Bio::Emboss::ajReportAppendHeader;
*ajReportAppendHeaderC = *Bio::Emboss::ajReportAppendHeaderC;
*ajReportAppendSubHeader = *Bio::Emboss::ajReportAppendSubHeader;
*ajReportAppendSubHeaderC = *Bio::Emboss::ajReportAppendSubHeaderC;
*ajReportAppendTail = *Bio::Emboss::ajReportAppendTail;
*ajReportAppendTailC = *Bio::Emboss::ajReportAppendTailC;
*ajReportAppendSubTail = *Bio::Emboss::ajReportAppendSubTail;
*ajReportAppendSubTailC = *Bio::Emboss::ajReportAppendSubTailC;
package Bio::Emboss::Residue;
*ajResidueDel = *Bio::Emboss::ajResidueDel;
*ajResidueCopy = *Bio::Emboss::ajResidueCopy;
*ajResidueSSEnv = *Bio::Emboss::ajResidueSSEnv;
*ajResidueEnv1 = *Bio::Emboss::ajResidueEnv1;
*ajResidueEnv2 = *Bio::Emboss::ajResidueEnv2;
*ajResidueEnv3 = *Bio::Emboss::ajResidueEnv3;
*ajResidueEnv4 = *Bio::Emboss::ajResidueEnv4;
*ajResidueEnv5 = *Bio::Emboss::ajResidueEnv5;
*ajResidueEnv6 = *Bio::Emboss::ajResidueEnv6;
*ajResidueEnv7 = *Bio::Emboss::ajResidueEnv7;
*ajResidueEnv8 = *Bio::Emboss::ajResidueEnv8;
*ajResidueEnv9 = *Bio::Emboss::ajResidueEnv9;
*ajResidueEnv10 = *Bio::Emboss::ajResidueEnv10;
*ajResidueEnv11 = *Bio::Emboss::ajResidueEnv11;
*ajResidueEnv12 = *Bio::Emboss::ajResidueEnv12;
*ajResidueEnv13 = *Bio::Emboss::ajResidueEnv13;
*ajResidueEnv14 = *Bio::Emboss::ajResidueEnv14;
*ajResidueEnv15 = *Bio::Emboss::ajResidueEnv15;
*ajResidueEnv16 = *Bio::Emboss::ajResidueEnv16;
package Bio::Emboss::Scop;
*ajScopDel = *Bio::Emboss::ajScopDel;
*ajScopCopy = *Bio::Emboss::ajScopCopy;
*ajScopArrFindScopid = *Bio::Emboss::ajScopArrFindScopid;
*ajScopArrFindSunid = *Bio::Emboss::ajScopArrFindSunid;
*ajScopArrFindPdbid = *Bio::Emboss::ajScopArrFindPdbid;
*embDmxScopToScophit = *Bio::Emboss::embDmxScopToScophit;
package Bio::Emboss::Scopalg;
*ajDmxScopalgDel = *Bio::Emboss::ajDmxScopalgDel;
*ajDmxScopalgGetseqs = *Bio::Emboss::ajDmxScopalgGetseqs;
*ajDmxScopalgWrite = *Bio::Emboss::ajDmxScopalgWrite;
*ajDmxScopalgWriteClustal = *Bio::Emboss::ajDmxScopalgWriteClustal;
*ajDmxScopalgWriteClustal2 = *Bio::Emboss::ajDmxScopalgWriteClustal2;
*ajDmxScopalgWriteFasta = *Bio::Emboss::ajDmxScopalgWriteFasta;
*embDmxScopalgToScop = *Bio::Emboss::embDmxScopalgToScop;
package Bio::Emboss::Scophit;
*ajDmxScophitDel = *Bio::Emboss::ajDmxScophitDel;
*ajDmxScophitCopy = *Bio::Emboss::ajDmxScophitCopy;
*ajDmxScophitTargetLowPriority = *Bio::Emboss::ajDmxScophitTargetLowPriority;
*ajDmxScophitTarget2 = *Bio::Emboss::ajDmxScophitTarget2;
*ajDmxScophitTarget = *Bio::Emboss::ajDmxScophitTarget;
*ajDmxScophitCheckTarget = *Bio::Emboss::ajDmxScophitCheckTarget;
*embDmxScophitsOverlapAcc = *Bio::Emboss::embDmxScophitsOverlapAcc;
*embDmxScophitsOverlap = *Bio::Emboss::embDmxScophitsOverlap;
*embDmxScophitMerge = *Bio::Emboss::embDmxScophitMerge;
package Bio::Emboss::Seq;
*ajFeattableNewSeq = *Bio::Emboss::ajFeattableNewSeq;
*ajSeqNewSeq = *Bio::Emboss::ajSeqNewSeq;
*ajSeqAssignAccC = *Bio::Emboss::ajSeqAssignAccC;
*ajSeqAssignAccS = *Bio::Emboss::ajSeqAssignAccS;
*ajSeqAssignDescC = *Bio::Emboss::ajSeqAssignDescC;
*ajSeqAssignDescS = *Bio::Emboss::ajSeqAssignDescS;
*ajSeqAssignEntryC = *Bio::Emboss::ajSeqAssignEntryC;
*ajSeqAssignEntryS = *Bio::Emboss::ajSeqAssignEntryS;
*ajSeqAssignFileC = *Bio::Emboss::ajSeqAssignFileC;
*ajSeqAssignFileS = *Bio::Emboss::ajSeqAssignFileS;
*ajSeqAssignFullC = *Bio::Emboss::ajSeqAssignFullC;
*ajSeqAssignFullS = *Bio::Emboss::ajSeqAssignFullS;
*ajSeqAssignGiC = *Bio::Emboss::ajSeqAssignGiC;
*ajSeqAssignGiS = *Bio::Emboss::ajSeqAssignGiS;
*ajSeqAssignNameC = *Bio::Emboss::ajSeqAssignNameC;
*ajSeqAssignNameS = *Bio::Emboss::ajSeqAssignNameS;
*ajSeqAssignSeqC = *Bio::Emboss::ajSeqAssignSeqC;
*ajSeqAssignSeqLenC = *Bio::Emboss::ajSeqAssignSeqLenC;
*ajSeqAssignSeqS = *Bio::Emboss::ajSeqAssignSeqS;
*ajSeqAssignSvC = *Bio::Emboss::ajSeqAssignSvC;
*ajSeqAssignSvS = *Bio::Emboss::ajSeqAssignSvS;
*ajSeqAssignUfoC = *Bio::Emboss::ajSeqAssignUfoC;
*ajSeqAssignUfoS = *Bio::Emboss::ajSeqAssignUfoS;
*ajSeqAssignUsaC = *Bio::Emboss::ajSeqAssignUsaC;
*ajSeqAssignUsaS = *Bio::Emboss::ajSeqAssignUsaS;
*ajSeqSetOffsets = *Bio::Emboss::ajSeqSetOffsets;
*ajSeqSetRange = *Bio::Emboss::ajSeqSetRange;
*ajSeqSetRangeRev = *Bio::Emboss::ajSeqSetRangeRev;
*ajSeqComplement = *Bio::Emboss::ajSeqComplement;
*ajSeqFmtLower = *Bio::Emboss::ajSeqFmtLower;
*ajSeqFmtUpper = *Bio::Emboss::ajSeqFmtUpper;
*ajSeqReverseDo = *Bio::Emboss::ajSeqReverseDo;
*ajSeqReverseForce = *Bio::Emboss::ajSeqReverseForce;
*ajSeqReverseOnly = *Bio::Emboss::ajSeqReverseOnly;
*ajSeqGetAccC = *Bio::Emboss::ajSeqGetAccC;
*ajSeqGetAccS = *Bio::Emboss::ajSeqGetAccS;
*ajSeqGetBegin = *Bio::Emboss::ajSeqGetBegin;
*ajSeqGetBeginTrue = *Bio::Emboss::ajSeqGetBeginTrue;
*ajSeqGetDescC = *Bio::Emboss::ajSeqGetDescC;
*ajSeqGetDescS = *Bio::Emboss::ajSeqGetDescS;
*ajSeqGetEnd = *Bio::Emboss::ajSeqGetEnd;
*ajSeqGetEndTrue = *Bio::Emboss::ajSeqGetEndTrue;
*ajSeqGetEntryC = *Bio::Emboss::ajSeqGetEntryC;
*ajSeqGetEntryS = *Bio::Emboss::ajSeqGetEntryS;
*ajSeqGetFeat = *Bio::Emboss::ajSeqGetFeat;
*ajSeqGetFeatCopy = *Bio::Emboss::ajSeqGetFeatCopy;
*ajSeqGetGiC = *Bio::Emboss::ajSeqGetGiC;
*ajSeqGetGiS = *Bio::Emboss::ajSeqGetGiS;
*ajSeqGetLen = *Bio::Emboss::ajSeqGetLen;
*ajSeqGetLenTrue = *Bio::Emboss::ajSeqGetLenTrue;
*ajSeqGetNameC = *Bio::Emboss::ajSeqGetNameC;
*ajSeqGetNameS = *Bio::Emboss::ajSeqGetNameS;
*ajSeqGetOffend = *Bio::Emboss::ajSeqGetOffend;
*ajSeqGetOffset = *Bio::Emboss::ajSeqGetOffset;
*ajSeqGetRange = *Bio::Emboss::ajSeqGetRange;
*ajSeqGetRev = *Bio::Emboss::ajSeqGetRev;
*ajSeqGetSeqC = *Bio::Emboss::ajSeqGetSeqC;
*ajSeqGetSeqS = *Bio::Emboss::ajSeqGetSeqS;
*ajSeqGetSeqCopyC = *Bio::Emboss::ajSeqGetSeqCopyC;
*ajSeqGetSeqCopyS = *Bio::Emboss::ajSeqGetSeqCopyS;
*ajSeqGetSvC = *Bio::Emboss::ajSeqGetSvC;
*ajSeqGetSvS = *Bio::Emboss::ajSeqGetSvS;
*ajSeqGetTaxC = *Bio::Emboss::ajSeqGetTaxC;
*ajSeqGetTaxS = *Bio::Emboss::ajSeqGetTaxS;
*ajSeqGetUsaC = *Bio::Emboss::ajSeqGetUsaC;
*ajSeqGetUsaS = *Bio::Emboss::ajSeqGetUsaS;
*ajSeqIsNuc = *Bio::Emboss::ajSeqIsNuc;
*ajSeqIsProt = *Bio::Emboss::ajSeqIsProt;
*ajSeqIsReversedTrue = *Bio::Emboss::ajSeqIsReversedTrue;
*ajSeqIsReversed = *Bio::Emboss::ajSeqIsReversed;
*ajSeqIsTrimmed = *Bio::Emboss::ajSeqIsTrimmed;
*ajSeqCalcCheckgcg = *Bio::Emboss::ajSeqCalcCheckgcg;
*ajSeqCalcCount = *Bio::Emboss::ajSeqCalcCount;
*ajSeqCalcMolwt = *Bio::Emboss::ajSeqCalcMolwt;
*ajSeqCalcTrueposMin = *Bio::Emboss::ajSeqCalcTrueposMin;
*ajSeqCalcTruepos = *Bio::Emboss::ajSeqCalcTruepos;
*ajSeqDel = *Bio::Emboss::ajSeqDel;
*ajSeqClear = *Bio::Emboss::ajSeqClear;
*ajSeqTrace = *Bio::Emboss::ajSeqTrace;
*ajSeqTrim = *Bio::Emboss::ajSeqTrim;
*ajSeqGapStandard = *Bio::Emboss::ajSeqGapStandard;
*ajSeqSetName = *Bio::Emboss::ajSeqSetName;
*ajSeqSetNameMulti = *Bio::Emboss::ajSeqSetNameMulti;
*ajSeqSetUnique = *Bio::Emboss::ajSeqSetUnique;
*ajSeqGapFill = *Bio::Emboss::ajSeqGapFill;
*ajSeqConvertNum = *Bio::Emboss::ajSeqConvertNum;
*ajSeqCountGaps = *Bio::Emboss::ajSeqCountGaps;
*ajSeqTraceTitle = *Bio::Emboss::ajSeqTraceTitle;
*ajSeqGetDbC = *Bio::Emboss::ajSeqGetDbC;
*ajSeqGetDbS = *Bio::Emboss::ajSeqGetDbS;
*ajSeqAllRead = *Bio::Emboss::ajSeqAllRead;
*ajSeqRead = *Bio::Emboss::ajSeqRead;
*ajSeqTypeCheckIn = *Bio::Emboss::ajSeqTypeCheckIn;
*ajSeqGap = *Bio::Emboss::ajSeqGap;
*ajSeqGapLen = *Bio::Emboss::ajSeqGapLen;
*ajSeqSetNuc = *Bio::Emboss::ajSeqSetNuc;
*ajSeqSetProt = *Bio::Emboss::ajSeqSetProt;
*ajSeqType = *Bio::Emboss::ajSeqType;
*ajTrnNewPep = *Bio::Emboss::ajTrnNewPep;
*embEstFindSpliceSites = *Bio::Emboss::embEstFindSpliceSites;
*embEstShuffleSeq = *Bio::Emboss::embEstShuffleSeq;
*embEstAlignNonRecursive = *Bio::Emboss::embEstAlignNonRecursive;
*embEstAlignLinearSpace = *Bio::Emboss::embEstAlignLinearSpace;
*embPropProtGaps = *Bio::Emboss::embPropProtGaps;
*embPropProt1to3 = *Bio::Emboss::embPropProt1to3;
*embShowNew = *Bio::Emboss::embShowNew;
*ajSeqAssAcc = *Bio::Emboss::ajSeqAssAcc;
*ajSeqAssAccC = *Bio::Emboss::ajSeqAssAccC;
*ajSeqAssDesc = *Bio::Emboss::ajSeqAssDesc;
*ajSeqAssDescC = *Bio::Emboss::ajSeqAssDescC;
*ajSeqAssEntry = *Bio::Emboss::ajSeqAssEntry;
*ajSeqAssEntryC = *Bio::Emboss::ajSeqAssEntryC;
*ajSeqAssFile = *Bio::Emboss::ajSeqAssFile;
*ajSeqAssFull = *Bio::Emboss::ajSeqAssFull;
*ajSeqAssFullC = *Bio::Emboss::ajSeqAssFullC;
*ajSeqAssGi = *Bio::Emboss::ajSeqAssGi;
*ajSeqAssGiC = *Bio::Emboss::ajSeqAssGiC;
*ajSeqAssName = *Bio::Emboss::ajSeqAssName;
*ajSeqAssNameC = *Bio::Emboss::ajSeqAssNameC;
*ajSeqAssSeq = *Bio::Emboss::ajSeqAssSeq;
*ajSeqAssSeqC = *Bio::Emboss::ajSeqAssSeqC;
*ajSeqAssSeqCI = *Bio::Emboss::ajSeqAssSeqCI;
*ajSeqAssSv = *Bio::Emboss::ajSeqAssSv;
*ajSeqAssSvC = *Bio::Emboss::ajSeqAssSvC;
*ajSeqAssUfo = *Bio::Emboss::ajSeqAssUfo;
*ajSeqAssUfoC = *Bio::Emboss::ajSeqAssUfoC;
*ajSeqAssUsa = *Bio::Emboss::ajSeqAssUsa;
*ajSeqAssUsaC = *Bio::Emboss::ajSeqAssUsaC;
*ajSeqBegin = *Bio::Emboss::ajSeqBegin;
*ajSeqChar = *Bio::Emboss::ajSeqChar;
*ajSeqCharCopy = *Bio::Emboss::ajSeqCharCopy;
*ajSeqCharCopyL = *Bio::Emboss::ajSeqCharCopyL;
*ajSeqCheckGcg = *Bio::Emboss::ajSeqCheckGcg;
*ajSeqCompOnly = *Bio::Emboss::ajSeqCompOnly;
*ajSeqCopyFeat = *Bio::Emboss::ajSeqCopyFeat;
*ajSeqCount = *Bio::Emboss::ajSeqCount;
*ajSeqEnd = *Bio::Emboss::ajSeqEnd;
*ajSeqGetAcc = *Bio::Emboss::ajSeqGetAcc;
*ajSeqGetDesc = *Bio::Emboss::ajSeqGetDesc;
*ajSeqGetEntry = *Bio::Emboss::ajSeqGetEntry;
*ajSeqGetGi = *Bio::Emboss::ajSeqGetGi;
*ajSeqGetName = *Bio::Emboss::ajSeqGetName;
*ajSeqGetReverse = *Bio::Emboss::ajSeqGetReverse;
*ajSeqGetReversed = *Bio::Emboss::ajSeqGetReversed;
*ajSeqGetSv = *Bio::Emboss::ajSeqGetSv;
*ajSeqGetTax = *Bio::Emboss::ajSeqGetTax;
*ajSeqGetUsa = *Bio::Emboss::ajSeqGetUsa;
*ajSeqLen = *Bio::Emboss::ajSeqLen;
*ajSeqMakeUsa = *Bio::Emboss::ajSeqMakeUsa;
*ajSeqMakeUsaS = *Bio::Emboss::ajSeqMakeUsaS;
*ajSeqName = *Bio::Emboss::ajSeqName;
*ajSeqNewS = *Bio::Emboss::ajSeqNewS;
*ajSeqOffset = *Bio::Emboss::ajSeqOffset;
*ajSeqOffend = *Bio::Emboss::ajSeqOffend;
*ajSeqPos = *Bio::Emboss::ajSeqPos;
*ajSeqPosI = *Bio::Emboss::ajSeqPosI;
*ajSeqReplace = *Bio::Emboss::ajSeqReplace;
*ajSeqReplaceC = *Bio::Emboss::ajSeqReplaceC;
*ajSeqRev = *Bio::Emboss::ajSeqRev;
*ajSeqReverse = *Bio::Emboss::ajSeqReverse;
*ajSeqRevOnly = *Bio::Emboss::ajSeqRevOnly;
*ajSeqSetRangeDir = *Bio::Emboss::ajSeqSetRangeDir;
*ajSeqStr = *Bio::Emboss::ajSeqStr;
*ajSeqStrCopy = *Bio::Emboss::ajSeqStrCopy;
*ajSeqToLower = *Bio::Emboss::ajSeqToLower;
*ajSeqToUpper = *Bio::Emboss::ajSeqToUpper;
*ajSeqTrueBegin = *Bio::Emboss::ajSeqTrueBegin;
*ajSeqTrueEnd = *Bio::Emboss::ajSeqTrueEnd;
*ajSeqTrueLen = *Bio::Emboss::ajSeqTrueLen;
*ajSeqTruePos = *Bio::Emboss::ajSeqTruePos;
*ajSeqTruePosI = *Bio::Emboss::ajSeqTruePosI;
*ajSeqCalcCrc = *Bio::Emboss::ajSeqCalcCrc;
*ajSeqMod = *Bio::Emboss::ajSeqMod;
*ajSeqTraceT = *Bio::Emboss::ajSeqTraceT;
*ajSeqNum = *Bio::Emboss::ajSeqNum;
*ajSeqGapCount = *Bio::Emboss::ajSeqGapCount;
*ajSeqFill = *Bio::Emboss::ajSeqFill;
*ajSeqDefName = *Bio::Emboss::ajSeqDefName;
package Bio::Emboss::SeqCvt;
*ajSeqcvtGetCodeAsymS = *Bio::Emboss::ajSeqcvtGetCodeAsymS;
*ajSeqcvtTrace = *Bio::Emboss::ajSeqcvtTrace;
*ajSeqcvtDel = *Bio::Emboss::ajSeqcvtDel;
*ajSeqcvtGetCodeK = *Bio::Emboss::ajSeqcvtGetCodeK;
*ajSeqcvtGetCodeS = *Bio::Emboss::ajSeqcvtGetCodeS;
*ajSeqcvtGetLen = *Bio::Emboss::ajSeqcvtGetLen;
*ajSeqCvtTrace = *Bio::Emboss::ajSeqCvtTrace;
*ajSeqCvtDel = *Bio::Emboss::ajSeqCvtDel;
*ajSeqCvtLen = *Bio::Emboss::ajSeqCvtLen;
*ajSeqCvtK = *Bio::Emboss::ajSeqCvtK;
*ajSeqCvtKS = *Bio::Emboss::ajSeqCvtKS;
*ajSeqCvtKSRow = *Bio::Emboss::ajSeqCvtKSRow;
package Bio::Emboss::SeqDate;
*ajSeqdateNewDate = *Bio::Emboss::ajSeqdateNewDate;
*ajSeqdateDel = *Bio::Emboss::ajSeqdateDel;
*ajSeqdateSetCreateS = *Bio::Emboss::ajSeqdateSetCreateS;
*ajSeqdateSetModifyS = *Bio::Emboss::ajSeqdateSetModifyS;
*ajSeqdateSetModseqS = *Bio::Emboss::ajSeqdateSetModseqS;
package Bio::Emboss::SeqQuery;
*ajNamDbData = *Bio::Emboss::ajNamDbData;
*ajNamDbQuery = *Bio::Emboss::ajNamDbQuery;
*ajSeqQueryDel = *Bio::Emboss::ajSeqQueryDel;
*ajSeqQueryClear = *Bio::Emboss::ajSeqQueryClear;
*ajSeqQueryWild = *Bio::Emboss::ajSeqQueryWild;
*ajSeqQueryStarclear = *Bio::Emboss::ajSeqQueryStarclear;
*ajSeqQueryIs = *Bio::Emboss::ajSeqQueryIs;
*ajSeqQueryTrace = *Bio::Emboss::ajSeqQueryTrace;
package Bio::Emboss::SeqRef;
*ajSeqrefNewRef = *Bio::Emboss::ajSeqrefNewRef;
*ajSeqrefDel = *Bio::Emboss::ajSeqrefDel;
*ajSeqrefAppendAuthors = *Bio::Emboss::ajSeqrefAppendAuthors;
*ajSeqrefAppendComment = *Bio::Emboss::ajSeqrefAppendComment;
*ajSeqrefAppendGroupname = *Bio::Emboss::ajSeqrefAppendGroupname;
*ajSeqrefAppendLocation = *Bio::Emboss::ajSeqrefAppendLocation;
*ajSeqrefAppendPosition = *Bio::Emboss::ajSeqrefAppendPosition;
*ajSeqrefAppendTitle = *Bio::Emboss::ajSeqrefAppendTitle;
*ajSeqrefAppendXref = *Bio::Emboss::ajSeqrefAppendXref;
*ajSeqrefFmtAuthorsEmbl = *Bio::Emboss::ajSeqrefFmtAuthorsEmbl;
*ajSeqrefFmtAuthorsGb = *Bio::Emboss::ajSeqrefFmtAuthorsGb;
*ajSeqrefFmtLocationEmbl = *Bio::Emboss::ajSeqrefFmtLocationEmbl;
*ajSeqrefFmtLocationGb = *Bio::Emboss::ajSeqrefFmtLocationGb;
*ajSeqrefFmtTitleGb = *Bio::Emboss::ajSeqrefFmtTitleGb;
*ajSeqrefSetAuthors = *Bio::Emboss::ajSeqrefSetAuthors;
*ajSeqrefSetComment = *Bio::Emboss::ajSeqrefSetComment;
*ajSeqrefSetGroupname = *Bio::Emboss::ajSeqrefSetGroupname;
*ajSeqrefSetLocation = *Bio::Emboss::ajSeqrefSetLocation;
*ajSeqrefSetLoctype = *Bio::Emboss::ajSeqrefSetLoctype;
*ajSeqrefSetPosition = *Bio::Emboss::ajSeqrefSetPosition;
*ajSeqrefSetTitle = *Bio::Emboss::ajSeqrefSetTitle;
*ajSeqrefSetXref = *Bio::Emboss::ajSeqrefSetXref;
*ajSeqrefSetnumNumber = *Bio::Emboss::ajSeqrefSetnumNumber;
*ajSeqrefStandard = *Bio::Emboss::ajSeqrefStandard;
package Bio::Emboss::Seqall;
*ajSeqallDel = *Bio::Emboss::ajSeqallDel;
*ajSeqallSetRange = *Bio::Emboss::ajSeqallSetRange;
*ajSeqallSetRangeRev = *Bio::Emboss::ajSeqallSetRangeRev;
*ajSeqallGetFilename = *Bio::Emboss::ajSeqallGetFilename;
*ajSeqallGetName = *Bio::Emboss::ajSeqallGetName;
*ajSeqallGetUsa = *Bio::Emboss::ajSeqallGetUsa;
*ajSeqallClear = *Bio::Emboss::ajSeqallClear;
*ajSeqallGetseqBegin = *Bio::Emboss::ajSeqallGetseqBegin;
*ajSeqallGetseqEnd = *Bio::Emboss::ajSeqallGetseqEnd;
*ajSeqallGetseqLen = *Bio::Emboss::ajSeqallGetseqLen;
*ajSeqallGetseqName = *Bio::Emboss::ajSeqallGetseqName;
*ajSeqallGetseqRange = *Bio::Emboss::ajSeqallGetseqRange;
*ajSeqallNext = *Bio::Emboss::ajSeqallNext;
*ajSeqallReverse = *Bio::Emboss::ajSeqallReverse;
*ajSeqallToLower = *Bio::Emboss::ajSeqallToLower;
*ajSeqallToUpper = *Bio::Emboss::ajSeqallToUpper;
*ajSeqallBegin = *Bio::Emboss::ajSeqallBegin;
*ajSeqallEnd = *Bio::Emboss::ajSeqallEnd;
*ajSeqallLen = *Bio::Emboss::ajSeqallLen;
*ajSeqallGetNameSeq = *Bio::Emboss::ajSeqallGetNameSeq;
*ajSeqallGetRange = *Bio::Emboss::ajSeqallGetRange;
package Bio::Emboss::Seqin;
*ajSeqAccessAsis = *Bio::Emboss::ajSeqAccessAsis;
*ajSeqAccessFile = *Bio::Emboss::ajSeqAccessFile;
*ajSeqAccessOffset = *Bio::Emboss::ajSeqAccessOffset;
*ajSeqinDel = *Bio::Emboss::ajSeqinDel;
*ajSeqinUsa = *Bio::Emboss::ajSeqinUsa;
*ajSeqinSetNuc = *Bio::Emboss::ajSeqinSetNuc;
*ajSeqinSetProt = *Bio::Emboss::ajSeqinSetProt;
*ajSeqinSetRange = *Bio::Emboss::ajSeqinSetRange;
*ajSeqinClearPos = *Bio::Emboss::ajSeqinClearPos;
*ajSeqinClear = *Bio::Emboss::ajSeqinClear;
*ajSeqinTrace = *Bio::Emboss::ajSeqinTrace;
package Bio::Emboss::Seqout;
*ajSeqoutOpen = *Bio::Emboss::ajSeqoutOpen;
*ajSeqoutClear = *Bio::Emboss::ajSeqoutClear;
*ajSeqoutTrace = *Bio::Emboss::ajSeqoutTrace;
*ajSeqoutDel = *Bio::Emboss::ajSeqoutDel;
*ajSeqoutWriteSeq = *Bio::Emboss::ajSeqoutWriteSeq;
*ajSeqoutWriteSet = *Bio::Emboss::ajSeqoutWriteSet;
*ajSeqoutClose = *Bio::Emboss::ajSeqoutClose;
*ajSeqoutOpenFilename = *Bio::Emboss::ajSeqoutOpenFilename;
*ajSeqoutDumpSwisslike = *Bio::Emboss::ajSeqoutDumpSwisslike;
*ajSeqoutClearUsa = *Bio::Emboss::ajSeqoutClearUsa;
*ajSeqoutSetFormatC = *Bio::Emboss::ajSeqoutSetFormatC;
*ajSeqoutSetFormatS = *Bio::Emboss::ajSeqoutSetFormatS;
*ajSeqoutSetNameDefaultC = *Bio::Emboss::ajSeqoutSetNameDefaultC;
*ajSeqoutSetNameDefaultS = *Bio::Emboss::ajSeqoutSetNameDefaultS;
*ajSeqoutGetBasecount = *Bio::Emboss::ajSeqoutGetBasecount;
*ajSeqoutGetCheckgcg = *Bio::Emboss::ajSeqoutGetCheckgcg;
*ajSeqAllWrite = *Bio::Emboss::ajSeqAllWrite;
*ajSeqsetWrite = *Bio::Emboss::ajSeqsetWrite;
*ajSeqWriteClose = *Bio::Emboss::ajSeqWriteClose;
*ajSeqWrite = *Bio::Emboss::ajSeqWrite;
*ajSeqFileNewOut = *Bio::Emboss::ajSeqFileNewOut;
*ajSeqOutSetFormat = *Bio::Emboss::ajSeqOutSetFormat;
*ajSeqOutSetFormatC = *Bio::Emboss::ajSeqOutSetFormatC;
*ajSeqoutUsa = *Bio::Emboss::ajSeqoutUsa;
*ajSeqoutCheckGcg = *Bio::Emboss::ajSeqoutCheckGcg;
*ajSeqoutDefName = *Bio::Emboss::ajSeqoutDefName;
*ajSeqoutCount = *Bio::Emboss::ajSeqoutCount;
package Bio::Emboss::Seqset;
*ajAlignConsStats = *Bio::Emboss::ajAlignConsStats;
*ajSeqsetDel = *Bio::Emboss::ajSeqsetDel;
*ajSeqsetDelarray = *Bio::Emboss::ajSeqsetDelarray;
*ajSeqsetGetFilename = *Bio::Emboss::ajSeqsetGetFilename;
*ajSeqsetGetFormat = *Bio::Emboss::ajSeqsetGetFormat;
*ajSeqsetGetRange = *Bio::Emboss::ajSeqsetGetRange;
*ajSeqsetGetUsa = *Bio::Emboss::ajSeqsetGetUsa;
*ajSeqsetFill = *Bio::Emboss::ajSeqsetFill;
*ajSeqsetReverse = *Bio::Emboss::ajSeqsetReverse;
*ajSeqsetSetRange = *Bio::Emboss::ajSeqsetSetRange;
*ajSeqsetTrim = *Bio::Emboss::ajSeqsetTrim;
*ajSeqsetIsDna = *Bio::Emboss::ajSeqsetIsDna;
*ajSeqsetIsNuc = *Bio::Emboss::ajSeqsetIsNuc;
*ajSeqsetIsProt = *Bio::Emboss::ajSeqsetIsProt;
*ajSeqsetIsRna = *Bio::Emboss::ajSeqsetIsRna;
*ajSeqsetGetOffend = *Bio::Emboss::ajSeqsetGetOffend;
*ajSeqsetGetOffset = *Bio::Emboss::ajSeqsetGetOffset;
*ajSeqsetFmtLower = *Bio::Emboss::ajSeqsetFmtLower;
*ajSeqsetFmtUpper = *Bio::Emboss::ajSeqsetFmtUpper;
*ajSeqsetGetBegin = *Bio::Emboss::ajSeqsetGetBegin;
*ajSeqsetGetEnd = *Bio::Emboss::ajSeqsetGetEnd;
*ajSeqsetGetLen = *Bio::Emboss::ajSeqsetGetLen;
*ajSeqsetGetNameC = *Bio::Emboss::ajSeqsetGetNameC;
*ajSeqsetGetNameS = *Bio::Emboss::ajSeqsetGetNameS;
*ajSeqsetGetSeqarray = *Bio::Emboss::ajSeqsetGetSeqarray;
*ajSeqsetGetSize = *Bio::Emboss::ajSeqsetGetSize;
*ajSeqsetGetTotweight = *Bio::Emboss::ajSeqsetGetTotweight;
*ajSeqsetGetseqAccC = *Bio::Emboss::ajSeqsetGetseqAccC;
*ajSeqsetGetseqAccS = *Bio::Emboss::ajSeqsetGetseqAccS;
*ajSeqsetGetseqNameC = *Bio::Emboss::ajSeqsetGetseqNameC;
*ajSeqsetGetseqNameS = *Bio::Emboss::ajSeqsetGetseqNameS;
*ajSeqsetGetseqSeq = *Bio::Emboss::ajSeqsetGetseqSeq;
*ajSeqsetGetseqSeqC = *Bio::Emboss::ajSeqsetGetseqSeqC;
*ajSeqsetGetseqSeqS = *Bio::Emboss::ajSeqsetGetseqSeqS;
*ajSeqsetGetseqWeight = *Bio::Emboss::ajSeqsetGetseqWeight;
*ajSeqsetRead = *Bio::Emboss::ajSeqsetRead;
*ajSeqsetFromList = *Bio::Emboss::ajSeqsetFromList;
*ajSeqsetFromPair = *Bio::Emboss::ajSeqsetFromPair;
*ajSeqsetApp = *Bio::Emboss::ajSeqsetApp;
*ajSeqsetSetNuc = *Bio::Emboss::ajSeqsetSetNuc;
*ajSeqsetSetProt = *Bio::Emboss::ajSeqsetSetProt;
*embConsCalc = *Bio::Emboss::embConsCalc;
*ajSeqsetToLower = *Bio::Emboss::ajSeqsetToLower;
*ajSeqsetToUpper = *Bio::Emboss::ajSeqsetToUpper;
*ajSeqsetAcc = *Bio::Emboss::ajSeqsetAcc;
*ajSeqsetBegin = *Bio::Emboss::ajSeqsetBegin;
*ajSeqsetEnd = *Bio::Emboss::ajSeqsetEnd;
*ajSeqsetLen = *Bio::Emboss::ajSeqsetLen;
*ajSeqsetGetName = *Bio::Emboss::ajSeqsetGetName;
*ajSeqsetName = *Bio::Emboss::ajSeqsetName;
*ajSeqsetSeq = *Bio::Emboss::ajSeqsetSeq;
*ajSeqsetGetSeq = *Bio::Emboss::ajSeqsetGetSeq;
*ajSeqsetGetSeqArray = *Bio::Emboss::ajSeqsetGetSeqArray;
*ajSeqsetSize = *Bio::Emboss::ajSeqsetSize;
*ajSeqsetTotweight = *Bio::Emboss::ajSeqsetTotweight;
*ajSeqsetWeight = *Bio::Emboss::ajSeqsetWeight;
package Bio::Emboss::Short;
*ajShortDel = *Bio::Emboss::ajShortDel;
*ajShortGet = *Bio::Emboss::ajShortGet;
*ajShortPut = *Bio::Emboss::ajShortPut;
*ajShortShort = *Bio::Emboss::ajShortShort;
*ajShortLen = *Bio::Emboss::ajShortLen;
package Bio::Emboss::Short2d;
*ajShort2dDel = *Bio::Emboss::ajShort2dDel;
*ajShort2dGet = *Bio::Emboss::ajShort2dGet;
*ajShort2dPut = *Bio::Emboss::ajShort2dPut;
*ajShort2dLen = *Bio::Emboss::ajShort2dLen;
*ajShort2dShort = *Bio::Emboss::ajShort2dShort;
package Bio::Emboss::Short3d;
*ajShort3dDel = *Bio::Emboss::ajShort3dDel;
*ajShort3dGet = *Bio::Emboss::ajShort3dGet;
*ajShort3dPut = *Bio::Emboss::ajShort3dPut;
*ajShort3dLen = *Bio::Emboss::ajShort3dLen;
*ajShort3dShort = *Bio::Emboss::ajShort3dShort;
package Bio::Emboss::Str;
*ajAlignFormatDefault = *Bio::Emboss::ajAlignFormatDefault;
*ajAlignFindFormat = *Bio::Emboss::ajAlignFindFormat;
*ajFloatParse = *Bio::Emboss::ajFloatParse;
*ajArrCommaList = *Bio::Emboss::ajArrCommaList;
*ajArrIntLine = *Bio::Emboss::ajArrIntLine;
*ajArrDoubleLine = *Bio::Emboss::ajArrDoubleLine;
*ajArrFloatLine = *Bio::Emboss::ajArrFloatLine;
*ajCodBacktranslate = *Bio::Emboss::ajCodBacktranslate;
*ajCodBacktranslateAmbig = *Bio::Emboss::ajCodBacktranslateAmbig;
*ajCodIndex = *Bio::Emboss::ajCodIndex;
*ajCodOutFormat = *Bio::Emboss::ajCodOutFormat;
*ajProbScore = *Bio::Emboss::ajProbScore;
*ajMeltEnergy = *Bio::Emboss::ajMeltEnergy;
*ajTm = *Bio::Emboss::ajTm;
*ajMeltGC = *Bio::Emboss::ajMeltGC;
*ajFeattabInNewSS = *Bio::Emboss::ajFeattabInNewSS;
*ajFeattabInNewSSF = *Bio::Emboss::ajFeattabInNewSSF;
*ajFeattabOutNewSSF = *Bio::Emboss::ajFeattabOutNewSSF;
*ajFeatOutFormatDefault = *Bio::Emboss::ajFeatOutFormatDefault;
*ajFeatLocToSeq = *Bio::Emboss::ajFeatLocToSeq;
*ajFeatGetLocs = *Bio::Emboss::ajFeatGetLocs;
*ajFeatGetTrans = *Bio::Emboss::ajFeatGetTrans;
*ajFeattableNew = *Bio::Emboss::ajFeattableNew;
*ajFeattableNewDna = *Bio::Emboss::ajFeattableNewDna;
*ajFeattableNewProt = *Bio::Emboss::ajFeattableNewProt;
*ajFeatLocMark = *Bio::Emboss::ajFeatLocMark;
*ajOutfileNew = *Bio::Emboss::ajOutfileNew;
*ajDirNew = *Bio::Emboss::ajDirNew;
*ajDirNewS = *Bio::Emboss::ajDirNewS;
*ajDirNewSS = *Bio::Emboss::ajDirNewSS;
*ajDiroutNew = *Bio::Emboss::ajDiroutNew;
*ajDiroutNewS = *Bio::Emboss::ajDiroutNewS;
*ajDiroutNewSS = *Bio::Emboss::ajDiroutNewSS;
*ajFileNewInPipe = *Bio::Emboss::ajFileNewInPipe;
*ajFileNewIn = *Bio::Emboss::ajFileNewIn;
*ajFileNewApp = *Bio::Emboss::ajFileNewApp;
*ajFileNewOut = *Bio::Emboss::ajFileNewOut;
*ajFileNewOutD = *Bio::Emboss::ajFileNewOutD;
*ajFileSetDir = *Bio::Emboss::ajFileSetDir;
*ajFileHasDir = *Bio::Emboss::ajFileHasDir;
*ajFileDataNew = *Bio::Emboss::ajFileDataNew;
*ajFileDataDirNew = *Bio::Emboss::ajFileDataDirNew;
*ajFileNameShorten = *Bio::Emboss::ajFileNameShorten;
*ajFileNameTrim = *Bio::Emboss::ajFileNameTrim;
*ajFileDataNewWrite = *Bio::Emboss::ajFileDataNewWrite;
*ajFileDir = *Bio::Emboss::ajFileDir;
*ajFileDirPath = *Bio::Emboss::ajFileDirPath;
*ajFileGetwd = *Bio::Emboss::ajFileGetwd;
*ajFileDirUp = *Bio::Emboss::ajFileDirUp;
*ajFileDirFix = *Bio::Emboss::ajFileDirFix;
*ajFileStat = *Bio::Emboss::ajFileStat;
*ajFileLength = *Bio::Emboss::ajFileLength;
*ajFileBuffNewIn = *Bio::Emboss::ajFileBuffNewIn;
*ajFileBuffNewS = *Bio::Emboss::ajFileBuffNewS;
*ajFileBuffNewDW = *Bio::Emboss::ajFileBuffNewDW;
*ajFileBuffNewDWE = *Bio::Emboss::ajFileBuffNewDWE;
*ajFileBuffNewDC = *Bio::Emboss::ajFileBuffNewDC;
*ajFileBuffNewDF = *Bio::Emboss::ajFileBuffNewDF;
*ajFileNewDW = *Bio::Emboss::ajFileNewDW;
*ajFileNewDWE = *Bio::Emboss::ajFileNewDWE;
*ajFileNewDF = *Bio::Emboss::ajFileNewDF;
*ajFileNewDC = *Bio::Emboss::ajFileNewDC;
*ajFileNameDir = *Bio::Emboss::ajFileNameDir;
*ajFileNameDirSet = *Bio::Emboss::ajFileNameDirSet;
*ajFileNameDirSetC = *Bio::Emboss::ajFileNameDirSetC;
*ajFileNameExt = *Bio::Emboss::ajFileNameExt;
*ajFileNameExtC = *Bio::Emboss::ajFileNameExtC;
*ajFileScan = *Bio::Emboss::ajFileScan;
*ajFileTestSkip = *Bio::Emboss::ajFileTestSkip;
*ajFileDirTrim = *Bio::Emboss::ajFileDirTrim;
*ajFileExtnTrim = *Bio::Emboss::ajFileExtnTrim;
*ajFileDirExtnTrim = *Bio::Emboss::ajFileDirExtnTrim;
*ajFileFileList = *Bio::Emboss::ajFileFileList;
*ajFileNameValid = *Bio::Emboss::ajFileNameValid;
*ajFmtPrintS = *Bio::Emboss::ajFmtPrintS;
*ajFmtPrintAppS = *Bio::Emboss::ajFmtPrintAppS;
*ajFmtScanS = *Bio::Emboss::ajFmtScanS;
*ajGraphCheckColour = *Bio::Emboss::ajGraphCheckColour;
*ajGraphGetBaseColourProt = *Bio::Emboss::ajGraphGetBaseColourProt;
*ajGraphGetBaseColourNuc = *Bio::Emboss::ajGraphGetBaseColourNuc;
*ajSp64Crc = *Bio::Emboss::ajSp64Crc;
*ajSp32Crc = *Bio::Emboss::ajSp32Crc;
*ajUserGet = *Bio::Emboss::ajUserGet;
*ajNamDbDetails = *Bio::Emboss::ajNamDbDetails;
*ajNamIsDbname = *Bio::Emboss::ajNamIsDbname;
*ajNamGetenv = *Bio::Emboss::ajNamGetenv;
*ajNamGetValue = *Bio::Emboss::ajNamGetValue;
*ajNamDatabase = *Bio::Emboss::ajNamDatabase;
*ajNamDbTest = *Bio::Emboss::ajNamDbTest;
*ajNamDbGetUrl = *Bio::Emboss::ajNamDbGetUrl;
*ajNamDbGetDbalias = *Bio::Emboss::ajNamDbGetDbalias;
*ajNamRootInstall = *Bio::Emboss::ajNamRootInstall;
*ajNamRootPack = *Bio::Emboss::ajNamRootPack;
*ajNamRootVersion = *Bio::Emboss::ajNamRootVersion;
*ajNamRoot = *Bio::Emboss::ajNamRoot;
*ajNamRootBase = *Bio::Emboss::ajNamRootBase;
*ajNamResolve = *Bio::Emboss::ajNamResolve;
*ajNamRsAttrValue = *Bio::Emboss::ajNamRsAttrValue;
*ajNamRsListValue = *Bio::Emboss::ajNamRsListValue;
*ajPhyloDistRead = *Bio::Emboss::ajPhyloDistRead;
*ajPhyloFreqRead = *Bio::Emboss::ajPhyloFreqRead;
*ajPhyloPropRead = *Bio::Emboss::ajPhyloPropRead;
*ajPhyloStateRead = *Bio::Emboss::ajPhyloStateRead;
*ajPhyloTreeRead = *Bio::Emboss::ajPhyloTreeRead;
*ajRangeGet = *Bio::Emboss::ajRangeGet;
*ajRangeGetLimits = *Bio::Emboss::ajRangeGetLimits;
*ajRangeFile = *Bio::Emboss::ajRangeFile;
*ajRangeFileLimits = *Bio::Emboss::ajRangeFileLimits;
*ajRegComp = *Bio::Emboss::ajRegComp;
*ajRegCompCase = *Bio::Emboss::ajRegCompCase;
*ajReportFormatDefault = *Bio::Emboss::ajReportFormatDefault;
*ajReportFindFormat = *Bio::Emboss::ajReportFindFormat;
*ajSeqNewNameS = *Bio::Emboss::ajSeqNewNameS;
*ajSeqNewRangeS = *Bio::Emboss::ajSeqNewRangeS;
*ajSeqstrReverse = *Bio::Emboss::ajSeqstrReverse;
*ajSeqstrCalcMolwt = *Bio::Emboss::ajSeqstrCalcMolwt;
*ajSeqstrConvertNum = *Bio::Emboss::ajSeqstrConvertNum;
*ajSeqtestIsAccession = *Bio::Emboss::ajSeqtestIsAccession;
*ajSeqtestIsSeqversion = *Bio::Emboss::ajSeqtestIsSeqversion;
*ajSeqstrCountGaps = *Bio::Emboss::ajSeqstrCountGaps;
*ajSeqstrComplement = *Bio::Emboss::ajSeqstrComplement;
*ajSeqclsSetEmbl = *Bio::Emboss::ajSeqclsSetEmbl;
*ajSeqclsSetGb = *Bio::Emboss::ajSeqclsSetGb;
*ajSeqclsGetEmbl = *Bio::Emboss::ajSeqclsGetEmbl;
*ajSeqdivSetEmbl = *Bio::Emboss::ajSeqdivSetEmbl;
*ajSeqdivSetGb = *Bio::Emboss::ajSeqdivSetGb;
*ajSeqdivGetEmbl = *Bio::Emboss::ajSeqdivGetEmbl;
*ajSeqdivGetGb = *Bio::Emboss::ajSeqdivGetGb;
*ajSeqmolSetEmbl = *Bio::Emboss::ajSeqmolSetEmbl;
*ajSeqmolSetGb = *Bio::Emboss::ajSeqmolSetGb;
*ajSeqmolGetEmbl = *Bio::Emboss::ajSeqmolGetEmbl;
*ajSeqmolGetGb = *Bio::Emboss::ajSeqmolGetGb;
*ajSeqMethodTest = *Bio::Emboss::ajSeqMethodTest;
*ajSeqMethod = *Bio::Emboss::ajSeqMethod;
*ajSeqallFile = *Bio::Emboss::ajSeqallFile;
*ajSeqFormatTest = *Bio::Emboss::ajSeqFormatTest;
*ajSeqParseFasta = *Bio::Emboss::ajSeqParseFasta;
*ajSeqParseNcbi = *Bio::Emboss::ajSeqParseNcbi;
*ajSeqGetFromUsa = *Bio::Emboss::ajSeqGetFromUsa;
*ajSeqsetGetFromUsa = *Bio::Emboss::ajSeqsetGetFromUsa;
*ajSeqTypeCheckS = *Bio::Emboss::ajSeqTypeCheckS;
*ajSeqTypeNucS = *Bio::Emboss::ajSeqTypeNucS;
*ajSeqTypeDnaS = *Bio::Emboss::ajSeqTypeDnaS;
*ajSeqTypeRnaS = *Bio::Emboss::ajSeqTypeRnaS;
*ajSeqTypeGapdnaS = *Bio::Emboss::ajSeqTypeGapdnaS;
*ajSeqTypeGaprnaS = *Bio::Emboss::ajSeqTypeGaprnaS;
*ajSeqTypeGapnucS = *Bio::Emboss::ajSeqTypeGapnucS;
*ajSeqTypeAnyprotS = *Bio::Emboss::ajSeqTypeAnyprotS;
*ajSeqTypeProtS = *Bio::Emboss::ajSeqTypeProtS;
*ajSeqTypeGapanyS = *Bio::Emboss::ajSeqTypeGapanyS;
*ajSeqGapS = *Bio::Emboss::ajSeqGapS;
*ajSeqTypeIsProt = *Bio::Emboss::ajSeqTypeIsProt;
*ajSeqTypeIsNuc = *Bio::Emboss::ajSeqTypeIsNuc;
*ajSeqTypeIsAny = *Bio::Emboss::ajSeqTypeIsAny;
*ajSeqTypeSummary = *Bio::Emboss::ajSeqTypeSummary;
*ajSeqoutNewFormatS = *Bio::Emboss::ajSeqoutNewFormatS;
*ajSeqoutstrGetFormatDefault = *Bio::Emboss::ajSeqoutstrGetFormatDefault;
*ajSeqoutstrIsFormatExists = *Bio::Emboss::ajSeqoutstrIsFormatExists;
*ajSeqoutstrIsFormatSingle = *Bio::Emboss::ajSeqoutstrIsFormatSingle;
*ajCharNewS = *Bio::Emboss::ajCharNewS;
*ajCharNewResS = *Bio::Emboss::ajCharNewResS;
*ajStrNewS = *Bio::Emboss::ajStrNewS;
*ajStrNewRef = *Bio::Emboss::ajStrNewRef;
*ajStrNewResS = *Bio::Emboss::ajStrNewResS;
*ajStrDel = *Bio::Emboss::ajStrDel;
*ajStrDelStatic = *Bio::Emboss::ajStrDelStatic;
*ajStrDelarray = *Bio::Emboss::ajStrDelarray;
*ajStrAssignC = *Bio::Emboss::ajStrAssignC;
*ajStrAssignK = *Bio::Emboss::ajStrAssignK;
*ajStrAssignS = *Bio::Emboss::ajStrAssignS;
*ajStrAssignEmptyC = *Bio::Emboss::ajStrAssignEmptyC;
*ajStrAssignEmptyS = *Bio::Emboss::ajStrAssignEmptyS;
*ajStrAssignLenC = *Bio::Emboss::ajStrAssignLenC;
*ajStrAssignRef = *Bio::Emboss::ajStrAssignRef;
*ajStrAssignResC = *Bio::Emboss::ajStrAssignResC;
*ajStrAssignResS = *Bio::Emboss::ajStrAssignResS;
*ajStrAssignSubC = *Bio::Emboss::ajStrAssignSubC;
*ajStrAssignSubS = *Bio::Emboss::ajStrAssignSubS;
*ajStrAppendC = *Bio::Emboss::ajStrAppendC;
*ajStrAppendK = *Bio::Emboss::ajStrAppendK;
*ajStrAppendS = *Bio::Emboss::ajStrAppendS;
*ajStrAppendCountK = *Bio::Emboss::ajStrAppendCountK;
*ajStrAppendLenC = *Bio::Emboss::ajStrAppendLenC;
*ajStrAppendSubS = *Bio::Emboss::ajStrAppendSubS;
*ajStrInsertC = *Bio::Emboss::ajStrInsertC;
*ajStrInsertK = *Bio::Emboss::ajStrInsertK;
*ajStrInsertS = *Bio::Emboss::ajStrInsertS;
*ajStrJoinC = *Bio::Emboss::ajStrJoinC;
*ajStrJoinS = *Bio::Emboss::ajStrJoinS;
*ajStrMask = *Bio::Emboss::ajStrMask;
*ajStrPasteS = *Bio::Emboss::ajStrPasteS;
*ajStrPasteCountK = *Bio::Emboss::ajStrPasteCountK;
*ajStrPasteMaxC = *Bio::Emboss::ajStrPasteMaxC;
*ajStrPasteMaxS = *Bio::Emboss::ajStrPasteMaxS;
*ajStrCutComments = *Bio::Emboss::ajStrCutComments;
*ajStrCutCommentsStart = *Bio::Emboss::ajStrCutCommentsStart;
*ajStrCutEnd = *Bio::Emboss::ajStrCutEnd;
*ajStrCutRange = *Bio::Emboss::ajStrCutRange;
*ajStrCutStart = *Bio::Emboss::ajStrCutStart;
*ajStrKeepRange = *Bio::Emboss::ajStrKeepRange;
*ajStrKeepSetC = *Bio::Emboss::ajStrKeepSetC;
*ajStrKeepSetAlphaC = *Bio::Emboss::ajStrKeepSetAlphaC;
*ajStrQuoteStrip = *Bio::Emboss::ajStrQuoteStrip;
*ajStrQuoteStripAll = *Bio::Emboss::ajStrQuoteStripAll;
*ajStrRemoveGap = *Bio::Emboss::ajStrRemoveGap;
*ajStrRemoveHtml = *Bio::Emboss::ajStrRemoveHtml;
*ajStrRemoveLastNewline = *Bio::Emboss::ajStrRemoveLastNewline;
*ajStrRemoveSetC = *Bio::Emboss::ajStrRemoveSetC;
*ajStrRemoveWhite = *Bio::Emboss::ajStrRemoveWhite;
*ajStrRemoveWhiteExcess = *Bio::Emboss::ajStrRemoveWhiteExcess;
*ajStrRemoveWild = *Bio::Emboss::ajStrRemoveWild;
*ajStrTrimC = *Bio::Emboss::ajStrTrimC;
*ajStrTrimEndC = *Bio::Emboss::ajStrTrimEndC;
*ajStrTrimStartC = *Bio::Emboss::ajStrTrimStartC;
*ajStrTrimWhite = *Bio::Emboss::ajStrTrimWhite;
*ajStrTrimWhiteEnd = *Bio::Emboss::ajStrTrimWhiteEnd;
*ajStrTruncateLen = *Bio::Emboss::ajStrTruncateLen;
*ajStrTruncatePos = *Bio::Emboss::ajStrTruncatePos;
*ajStrExchangeCC = *Bio::Emboss::ajStrExchangeCC;
*ajStrExchangeCS = *Bio::Emboss::ajStrExchangeCS;
*ajStrExchangeKK = *Bio::Emboss::ajStrExchangeKK;
*ajStrExchangeSC = *Bio::Emboss::ajStrExchangeSC;
*ajStrExchangeSS = *Bio::Emboss::ajStrExchangeSS;
*ajStrExchangeSetCC = *Bio::Emboss::ajStrExchangeSetCC;
*ajStrExchangeSetSS = *Bio::Emboss::ajStrExchangeSetSS;
*ajStrRandom = *Bio::Emboss::ajStrRandom;
*ajStrReverse = *Bio::Emboss::ajStrReverse;
*ajStrCalcCountC = *Bio::Emboss::ajStrCalcCountC;
*ajStrCalcCountK = *Bio::Emboss::ajStrCalcCountK;
*ajStrHasParentheses = *Bio::Emboss::ajStrHasParentheses;
*ajStrIsAlnum = *Bio::Emboss::ajStrIsAlnum;
*ajStrIsAlpha = *Bio::Emboss::ajStrIsAlpha;
*ajStrIsBool = *Bio::Emboss::ajStrIsBool;
*ajStrIsDouble = *Bio::Emboss::ajStrIsDouble;
*ajStrIsFloat = *Bio::Emboss::ajStrIsFloat;
*ajStrIsHex = *Bio::Emboss::ajStrIsHex;
*ajStrIsInt = *Bio::Emboss::ajStrIsInt;
*ajStrIsLong = *Bio::Emboss::ajStrIsLong;
*ajStrIsLower = *Bio::Emboss::ajStrIsLower;
*ajStrIsNum = *Bio::Emboss::ajStrIsNum;
*ajStrIsUpper = *Bio::Emboss::ajStrIsUpper;
*ajStrIsWhite = *Bio::Emboss::ajStrIsWhite;
*ajStrIsWild = *Bio::Emboss::ajStrIsWild;
*ajStrIsWord = *Bio::Emboss::ajStrIsWord;
*ajStrWhole = *Bio::Emboss::ajStrWhole;
*ajStrGetCharFirst = *Bio::Emboss::ajStrGetCharFirst;
*ajStrGetCharLast = *Bio::Emboss::ajStrGetCharLast;
*ajStrGetCharPos = *Bio::Emboss::ajStrGetCharPos;
*ajStrGetLen = *Bio::Emboss::ajStrGetLen;
*ajStrGetPtr = *Bio::Emboss::ajStrGetPtr;
*ajStrGetRes = *Bio::Emboss::ajStrGetRes;
*ajStrGetRoom = *Bio::Emboss::ajStrGetRoom;
*ajStrGetUse = *Bio::Emboss::ajStrGetUse;
*ajStrGetValid = *Bio::Emboss::ajStrGetValid;
*ajStrGetuniquePtr = *Bio::Emboss::ajStrGetuniquePtr;
*ajStrGetuniqueStr = *Bio::Emboss::ajStrGetuniqueStr;
*ajStrSetClear = *Bio::Emboss::ajStrSetClear;
*ajStrSetRes = *Bio::Emboss::ajStrSetRes;
*ajStrSetResRound = *Bio::Emboss::ajStrSetResRound;
*ajStrSetValid = *Bio::Emboss::ajStrSetValid;
*ajStrSetValidLen = *Bio::Emboss::ajStrSetValidLen;
*ajStrToBool = *Bio::Emboss::ajStrToBool;
*ajStrToDouble = *Bio::Emboss::ajStrToDouble;
*ajStrToFloat = *Bio::Emboss::ajStrToFloat;
*ajStrToHex = *Bio::Emboss::ajStrToHex;
*ajStrToInt = *Bio::Emboss::ajStrToInt;
*ajStrToLong = *Bio::Emboss::ajStrToLong;
*ajStrFromBool = *Bio::Emboss::ajStrFromBool;
*ajStrFromDouble = *Bio::Emboss::ajStrFromDouble;
*ajStrFromDoubleExp = *Bio::Emboss::ajStrFromDoubleExp;
*ajStrFromFloat = *Bio::Emboss::ajStrFromFloat;
*ajStrFromInt = *Bio::Emboss::ajStrFromInt;
*ajStrFromLong = *Bio::Emboss::ajStrFromLong;
*ajStrFmtBlock = *Bio::Emboss::ajStrFmtBlock;
*ajStrFmtLower = *Bio::Emboss::ajStrFmtLower;
*ajStrFmtLowerSub = *Bio::Emboss::ajStrFmtLowerSub;
*ajStrFmtQuote = *Bio::Emboss::ajStrFmtQuote;
*ajStrFmtTitle = *Bio::Emboss::ajStrFmtTitle;
*ajStrFmtUpper = *Bio::Emboss::ajStrFmtUpper;
*ajStrFmtUpperSub = *Bio::Emboss::ajStrFmtUpperSub;
*ajStrFmtWrap = *Bio::Emboss::ajStrFmtWrap;
*ajStrFmtWrapLeft = *Bio::Emboss::ajStrFmtWrapLeft;
*ajStrMatchC = *Bio::Emboss::ajStrMatchC;
*ajStrMatchS = *Bio::Emboss::ajStrMatchS;
*ajStrMatchCaseC = *Bio::Emboss::ajStrMatchCaseC;
*ajStrMatchCaseS = *Bio::Emboss::ajStrMatchCaseS;
*ajStrMatchWildC = *Bio::Emboss::ajStrMatchWildC;
*ajStrMatchWildS = *Bio::Emboss::ajStrMatchWildS;
*ajStrMatchWildWordC = *Bio::Emboss::ajStrMatchWildWordC;
*ajStrMatchWildWordS = *Bio::Emboss::ajStrMatchWildWordS;
*ajStrMatchWordAllS = *Bio::Emboss::ajStrMatchWordAllS;
*ajStrMatchWordOneS = *Bio::Emboss::ajStrMatchWordOneS;
*ajStrPrefixC = *Bio::Emboss::ajStrPrefixC;
*ajStrPrefixS = *Bio::Emboss::ajStrPrefixS;
*ajStrPrefixCaseC = *Bio::Emboss::ajStrPrefixCaseC;
*ajStrPrefixCaseS = *Bio::Emboss::ajStrPrefixCaseS;
*ajStrSuffixC = *Bio::Emboss::ajStrSuffixC;
*ajStrSuffixS = *Bio::Emboss::ajStrSuffixS;
*ajStrCmpC = *Bio::Emboss::ajStrCmpC;
*ajStrCmpLenC = *Bio::Emboss::ajStrCmpLenC;
*ajStrCmpS = *Bio::Emboss::ajStrCmpS;
*ajStrCmpCaseS = *Bio::Emboss::ajStrCmpCaseS;
*ajStrCmpLenS = *Bio::Emboss::ajStrCmpLenS;
*ajStrCmpWildC = *Bio::Emboss::ajStrCmpWildC;
*ajStrCmpWildS = *Bio::Emboss::ajStrCmpWildS;
*ajStrFindC = *Bio::Emboss::ajStrFindC;
*ajStrFindS = *Bio::Emboss::ajStrFindS;
*ajStrFindAnyC = *Bio::Emboss::ajStrFindAnyC;
*ajStrFindAnyK = *Bio::Emboss::ajStrFindAnyK;
*ajStrFindAnyS = *Bio::Emboss::ajStrFindAnyS;
*ajStrFindCaseC = *Bio::Emboss::ajStrFindCaseC;
*ajStrFindCaseS = *Bio::Emboss::ajStrFindCaseS;
*ajStrFindlastC = *Bio::Emboss::ajStrFindlastC;
*ajStrFindlastS = *Bio::Emboss::ajStrFindlastS;
*ajStrExtractFirst = *Bio::Emboss::ajStrExtractFirst;
*ajStrExtractWord = *Bio::Emboss::ajStrExtractWord;
*ajStrParseC = *Bio::Emboss::ajStrParseC;
*ajStrParseCount = *Bio::Emboss::ajStrParseCount;
*ajStrParseCountC = *Bio::Emboss::ajStrParseCountC;
*ajStrParseCountS = *Bio::Emboss::ajStrParseCountS;
*ajStrParseCountMultiC = *Bio::Emboss::ajStrParseCountMultiC;
*ajStrParseSplit = *Bio::Emboss::ajStrParseSplit;
*ajStrParseWhite = *Bio::Emboss::ajStrParseWhite;
*ajStrTrace = *Bio::Emboss::ajStrTrace;
*ajStrTraceFull = *Bio::Emboss::ajStrTraceFull;
*ajStrTraceTitle = *Bio::Emboss::ajStrTraceTitle;
*ajStrIterNew = *Bio::Emboss::ajStrIterNew;
*ajStrIterNewBack = *Bio::Emboss::ajStrIterNewBack;
*ajStrTokenNewC = *Bio::Emboss::ajStrTokenNewC;
*ajStrTokenNewS = *Bio::Emboss::ajStrTokenNewS;
*ajStrKeepSetS = *Bio::Emboss::ajStrKeepSetS;
*ajStrKeepSetAlpha = *Bio::Emboss::ajStrKeepSetAlpha;
*ajStrRemoveWhiteSpaces = *Bio::Emboss::ajStrRemoveWhiteSpaces;
*ajStrExchangeSetRestCK = *Bio::Emboss::ajStrExchangeSetRestCK;
*ajStrExchangeSetRestSK = *Bio::Emboss::ajStrExchangeSetRestSK;
*ajStrIsCharsetC = *Bio::Emboss::ajStrIsCharsetC;
*ajStrIsCharsetS = *Bio::Emboss::ajStrIsCharsetS;
*ajStrIsCharsetCaseC = *Bio::Emboss::ajStrIsCharsetCaseC;
*ajStrIsCharsetCaseS = *Bio::Emboss::ajStrIsCharsetCaseS;
*ajStrToUint = *Bio::Emboss::ajStrToUint;
*ajStrFromUint = *Bio::Emboss::ajStrFromUint;
*ajStrMatchWildCaseC = *Bio::Emboss::ajStrMatchWildCaseC;
*ajStrMatchWildCaseS = *Bio::Emboss::ajStrMatchWildCaseS;
*ajStrMatchWildWordCaseC = *Bio::Emboss::ajStrMatchWildWordCaseC;
*ajStrMatchWildWordCaseS = *Bio::Emboss::ajStrMatchWildWordCaseS;
*ajStrSuffixCaseC = *Bio::Emboss::ajStrSuffixCaseC;
*ajStrSuffixCaseS = *Bio::Emboss::ajStrSuffixCaseS;
*ajStrCmpWildCaseC = *Bio::Emboss::ajStrCmpWildCaseC;
*ajStrCmpWildCaseS = *Bio::Emboss::ajStrCmpWildCaseS;
*ajStrFindRestC = *Bio::Emboss::ajStrFindRestC;
*ajStrFindRestS = *Bio::Emboss::ajStrFindRestS;
*ajStrFindRestCaseC = *Bio::Emboss::ajStrFindRestCaseC;
*ajStrFindRestCaseS = *Bio::Emboss::ajStrFindRestCaseS;
*ajStrKeepSetAlphaS = *Bio::Emboss::ajStrKeepSetAlphaS;
*ajStrKeepSetAlphaRest = *Bio::Emboss::ajStrKeepSetAlphaRest;
*ajStrKeepSetAlphaRestC = *Bio::Emboss::ajStrKeepSetAlphaRestC;
*ajStrKeepSetAlphaRestS = *Bio::Emboss::ajStrKeepSetAlphaRestS;
*ajStrExchangePosCC = *Bio::Emboss::ajStrExchangePosCC;
*ajStrFmtWrapAt = *Bio::Emboss::ajStrFmtWrapAt;
*ajSysArglistBuild = *Bio::Emboss::ajSysArglistBuild;
*ajSysFileUnlink = *Bio::Emboss::ajSysFileUnlink;
*ajSysFileWhich = *Bio::Emboss::ajSysFileWhich;
*ajSysSystem = *Bio::Emboss::ajSysSystem;
*ajSysSystemOut = *Bio::Emboss::ajSysSystemOut;
*ajTrnNew = *Bio::Emboss::ajTrnNew;
*ajUtilGetUid = *Bio::Emboss::ajUtilGetUid;
*embDbiFileList = *Bio::Emboss::embDbiFileList;
*embDbiFileListExc = *Bio::Emboss::embDbiFileListExc;
*embDbiFlatOpenlib = *Bio::Emboss::embDbiFlatOpenlib;
*embDbiRmFile = *Bio::Emboss::embDbiRmFile;
*embDbiRmFileI = *Bio::Emboss::embDbiRmFileI;
*embDbiRmEntryFile = *Bio::Emboss::embDbiRmEntryFile;
*embDbiSortFile = *Bio::Emboss::embDbiSortFile;
*embDbiSysCmd = *Bio::Emboss::embDbiSysCmd;
*embDbiFileSingle = *Bio::Emboss::embDbiFileSingle;
*embDbiFileIn = *Bio::Emboss::embDbiFileIn;
*embDbiFileOut = *Bio::Emboss::embDbiFileOut;
*embDbiFileIndex = *Bio::Emboss::embDbiFileIndex;
*embDbiWriteDivision = *Bio::Emboss::embDbiWriteDivision;
*embDbiSortWriteFields = *Bio::Emboss::embDbiSortWriteFields;
*embDbiMemWriteFields = *Bio::Emboss::embDbiMemWriteFields;
*embDbiDateSet = *Bio::Emboss::embDbiDateSet;
*embDbiMaxlen = *Bio::Emboss::embDbiMaxlen;
*embScopToPdbid = *Bio::Emboss::embScopToPdbid;
*embScopToSp = *Bio::Emboss::embScopToSp;
*embScopToAcc = *Bio::Emboss::embScopToAcc;
*embGrpMakeNewGnode = *Bio::Emboss::embGrpMakeNewGnode;
*embGrpMakeNewPnode = *Bio::Emboss::embGrpMakeNewPnode;
*embIepCompS = *Bio::Emboss::embIepCompS;
*embIepIepS = *Bio::Emboss::embIepIepS;
*embBtreeEmblKW = *Bio::Emboss::embBtreeEmblKW;
*embBtreeEmblTX = *Bio::Emboss::embBtreeEmblTX;
*embBtreeEmblAC = *Bio::Emboss::embBtreeEmblAC;
*embBtreeEmblSV = *Bio::Emboss::embBtreeEmblSV;
*embBtreeEmblDE = *Bio::Emboss::embBtreeEmblDE;
*embBtreeGenBankAC = *Bio::Emboss::embBtreeGenBankAC;
*embBtreeGenBankKW = *Bio::Emboss::embBtreeGenBankKW;
*embBtreeGenBankDE = *Bio::Emboss::embBtreeGenBankDE;
*embBtreeGenBankTX = *Bio::Emboss::embBtreeGenBankTX;
*embBtreeFastaDE = *Bio::Emboss::embBtreeFastaDE;
*embBtreeReadDir = *Bio::Emboss::embBtreeReadDir;
*embMatProtScanInt = *Bio::Emboss::embMatProtScanInt;
*embMiscMatchPattern = *Bio::Emboss::embMiscMatchPattern;
*embMolGetFrags = *Bio::Emboss::embMolGetFrags;
*embNmerInt2nuc = *Bio::Emboss::embNmerInt2nuc;
*embNmerInt2prot = *Bio::Emboss::embNmerInt2prot;
*embPdbidToSp = *Bio::Emboss::embPdbidToSp;
*embPdbidToAcc = *Bio::Emboss::embPdbidToAcc;
*embStrideToThree = *Bio::Emboss::embStrideToThree;
*embShowUpperRange = *Bio::Emboss::embShowUpperRange;
*embShowColourRange = *Bio::Emboss::embShowColourRange;
*ajAcdProgramS = *Bio::Emboss::ajAcdProgramS;
*ajListstrNewArgs = *Bio::Emboss::ajListstrNewArgs;
*ajSeqCompOnlyStr = *Bio::Emboss::ajSeqCompOnlyStr;
*ajSeqCrc = *Bio::Emboss::ajSeqCrc;
*ajSeqMW = *Bio::Emboss::ajSeqMW;
*ajSeqNewRange = *Bio::Emboss::ajSeqNewRange;
*ajSeqNewStr = *Bio::Emboss::ajSeqNewStr;
*ajSeqReverseStr = *Bio::Emboss::ajSeqReverseStr;
*ajSeqNumS = *Bio::Emboss::ajSeqNumS;
*ajSeqGapCountS = *Bio::Emboss::ajSeqGapCountS;
*ajSeqGapStandardS = *Bio::Emboss::ajSeqGapStandardS;
*ajIsAccession = *Bio::Emboss::ajIsAccession;
*ajIsSeqversion = *Bio::Emboss::ajIsSeqversion;
*ajSeqstrComplementOnly = *Bio::Emboss::ajSeqstrComplementOnly;
*ajSeqOutFormatSingle = *Bio::Emboss::ajSeqOutFormatSingle;
*ajSeqOutFormatDefault = *Bio::Emboss::ajSeqOutFormatDefault;
*ajSeqFindOutFormat = *Bio::Emboss::ajSeqFindOutFormat;
*ajCharNew = *Bio::Emboss::ajCharNew;
*ajStrApp = *Bio::Emboss::ajStrApp;
*ajStrAppC = *Bio::Emboss::ajStrAppC;
*ajStrAppCI = *Bio::Emboss::ajStrAppCI;
*ajStrAppK = *Bio::Emboss::ajStrAppK;
*ajStrAppKI = *Bio::Emboss::ajStrAppKI;
*ajStrAppSub = *Bio::Emboss::ajStrAppSub;
*ajStrArrayDel = *Bio::Emboss::ajStrArrayDel;
*ajStrAss = *Bio::Emboss::ajStrAss;
*ajStrAssC = *Bio::Emboss::ajStrAssC;
*ajStrAssCI = *Bio::Emboss::ajStrAssCI;
*ajStrAssCL = *Bio::Emboss::ajStrAssCL;
*ajStrAssI = *Bio::Emboss::ajStrAssI;
*ajStrAssK = *Bio::Emboss::ajStrAssK;
*ajStrAssL = *Bio::Emboss::ajStrAssL;
*ajStrAssS = *Bio::Emboss::ajStrAssS;
*ajStrAssSub = *Bio::Emboss::ajStrAssSub;
*ajStrAssSubC = *Bio::Emboss::ajStrAssSubC;
*ajStrBlock = *Bio::Emboss::ajStrBlock;
*ajStrChar = *Bio::Emboss::ajStrChar;
*ajStrChomp = *Bio::Emboss::ajStrChomp;
*ajStrChompC = *Bio::Emboss::ajStrChompC;
*ajStrChompEnd = *Bio::Emboss::ajStrChompEnd;
*ajStrChop = *Bio::Emboss::ajStrChop;
*ajStrClean = *Bio::Emboss::ajStrClean;
*ajStrCleanWhite = *Bio::Emboss::ajStrCleanWhite;
*ajStrClear = *Bio::Emboss::ajStrClear;
*ajStrCmpCase = *Bio::Emboss::ajStrCmpCase;
*ajStrCmpO = *Bio::Emboss::ajStrCmpO;
*ajStrCmpWild = *Bio::Emboss::ajStrCmpWild;
*ajStrConvert = *Bio::Emboss::ajStrConvert;
*ajStrConvertCC = *Bio::Emboss::ajStrConvertCC;
*ajStrCopy = *Bio::Emboss::ajStrCopy;
*ajStrCopyC = *Bio::Emboss::ajStrCopyC;
*ajStrCountC = *Bio::Emboss::ajStrCountC;
*ajStrCountK = *Bio::Emboss::ajStrCountK;
*ajStrCut = *Bio::Emboss::ajStrCut;
*ajStrDegap = *Bio::Emboss::ajStrDegap;
*ajStrDelim = *Bio::Emboss::ajStrDelim;
*ajStrDelReuse = *Bio::Emboss::ajStrDelReuse;
*ajStrDup = *Bio::Emboss::ajStrDup;
*ajStrFind = *Bio::Emboss::ajStrFind;
*ajStrFindCase = *Bio::Emboss::ajStrFindCase;
*ajStrFindK = *Bio::Emboss::ajStrFindK;
*ajStrFill = *Bio::Emboss::ajStrFill;
*ajStrFix = *Bio::Emboss::ajStrFix;
*ajStrFixI = *Bio::Emboss::ajStrFixI;
*ajStrFromDoubleE = *Bio::Emboss::ajStrFromDoubleE;
*ajStrInsert = *Bio::Emboss::ajStrInsert;
*ajStrIsSpace = *Bio::Emboss::ajStrIsSpace;
*ajStrIter = *Bio::Emboss::ajStrIter;
*ajStrIterBack = *Bio::Emboss::ajStrIterBack;
*ajStrKeepAlphaC = *Bio::Emboss::ajStrKeepAlphaC;
*ajStrKeepC = *Bio::Emboss::ajStrKeepC;
*ajStrLen = *Bio::Emboss::ajStrLen;
*ajStrListToArray = *Bio::Emboss::ajStrListToArray;
*ajStrMatch = *Bio::Emboss::ajStrMatch;
*ajStrMatchCase = *Bio::Emboss::ajStrMatchCase;
*ajStrMatchWild = *Bio::Emboss::ajStrMatchWild;
*ajStrMatchWord = *Bio::Emboss::ajStrMatchWord;
*ajStrMod = *Bio::Emboss::ajStrMod;
*ajStrModL = *Bio::Emboss::ajStrModL;
*ajStrModMinL = *Bio::Emboss::ajStrModMinL;
*ajStrNCmpC = *Bio::Emboss::ajStrNCmpC;
*ajStrNCmpO = *Bio::Emboss::ajStrNCmpO;
*ajStrParentheses = *Bio::Emboss::ajStrParentheses;
*ajStrPos = *Bio::Emboss::ajStrPos;
*ajStrPosI = *Bio::Emboss::ajStrPosI;
*ajStrPrefix = *Bio::Emboss::ajStrPrefix;
*ajStrPrefixCase = *Bio::Emboss::ajStrPrefixCase;
*ajStrQuote = *Bio::Emboss::ajStrQuote;
*ajStrReplace = *Bio::Emboss::ajStrReplace;
*ajStrReplaceC = *Bio::Emboss::ajStrReplaceC;
*ajStrReplaceK = *Bio::Emboss::ajStrReplaceK;
*ajStrReplaceS = *Bio::Emboss::ajStrReplaceS;
*ajStrRef = *Bio::Emboss::ajStrRef;
*ajStrRemoveCharsC = *Bio::Emboss::ajStrRemoveCharsC;
*ajStrRemoveNewline = *Bio::Emboss::ajStrRemoveNewline;
*ajStrRev = *Bio::Emboss::ajStrRev;
*ajStrRFindC = *Bio::Emboss::ajStrRFindC;
*ajStrRoom = *Bio::Emboss::ajStrRoom;
*ajStrSet = *Bio::Emboss::ajStrSet;
*ajStrSetC = *Bio::Emboss::ajStrSetC;
*ajStrSize = *Bio::Emboss::ajStrSize;
*ajStrStr = *Bio::Emboss::ajStrStr;
*ajStrStrMod = *Bio::Emboss::ajStrStrMod;
*ajStrSub = *Bio::Emboss::ajStrSub;
*ajStrSubstitute = *Bio::Emboss::ajStrSubstitute;
*ajStrSubstituteCC = *Bio::Emboss::ajStrSubstituteCC;
*ajStrSubstituteKK = *Bio::Emboss::ajStrSubstituteKK;
*ajStrSuffix = *Bio::Emboss::ajStrSuffix;
*ajStrTok = *Bio::Emboss::ajStrTok;
*ajStrTokC = *Bio::Emboss::ajStrTokC;
*ajStrToken = *Bio::Emboss::ajStrToken;
*ajStrTokenCount = *Bio::Emboss::ajStrTokenCount;
*ajStrTokenCountR = *Bio::Emboss::ajStrTokenCountR;
*ajStrTokenInit = *Bio::Emboss::ajStrTokenInit;
*ajStrTokenRest = *Bio::Emboss::ajStrTokenRest;
*ajStrToLower = *Bio::Emboss::ajStrToLower;
*ajStrToLowerII = *Bio::Emboss::ajStrToLowerII;
*ajStrToTitle = *Bio::Emboss::ajStrToTitle;
*ajStrToUpper = *Bio::Emboss::ajStrToUpper;
*ajStrToUpperII = *Bio::Emboss::ajStrToUpperII;
*ajStrTrim = *Bio::Emboss::ajStrTrim;
*ajStrTruncate = *Bio::Emboss::ajStrTruncate;
*ajStrWildPrefix = *Bio::Emboss::ajStrWildPrefix;
*ajStrWrap = *Bio::Emboss::ajStrWrap;
*ajStrWrapLeft = *Bio::Emboss::ajStrWrapLeft;
*ajStrUncomment = *Bio::Emboss::ajStrUncomment;
*ajStrUncommentStart = *Bio::Emboss::ajStrUncommentStart;
*ajSysBasename = *Bio::Emboss::ajSysBasename;
*ajSysWhich = *Bio::Emboss::ajSysWhich;
*ajSystem = *Bio::Emboss::ajSystem;
*ajSysUnlink = *Bio::Emboss::ajSysUnlink;
*ajSysArglist = *Bio::Emboss::ajSysArglist;
*ajUtilUid = *Bio::Emboss::ajUtilUid;
package Bio::Emboss::StrTok;
*ajStrTokenDel = *Bio::Emboss::ajStrTokenDel;
*ajStrTokenAssign = *Bio::Emboss::ajStrTokenAssign;
*ajStrTokenAssignC = *Bio::Emboss::ajStrTokenAssignC;
*ajStrTokenAssignS = *Bio::Emboss::ajStrTokenAssignS;
*ajStrTokenReset = *Bio::Emboss::ajStrTokenReset;
*ajStrTokenTrace = *Bio::Emboss::ajStrTokenTrace;
*ajStrTokenNextFind = *Bio::Emboss::ajStrTokenNextFind;
*ajStrTokenNextFindC = *Bio::Emboss::ajStrTokenNextFindC;
*ajStrTokenNextParse = *Bio::Emboss::ajStrTokenNextParse;
*ajStrTokenNextParseC = *Bio::Emboss::ajStrTokenNextParseC;
*ajStrTokenNextParseS = *Bio::Emboss::ajStrTokenNextParseS;
*ajStrTokenRestParse = *Bio::Emboss::ajStrTokenRestParse;
*ajStrTokenAss = *Bio::Emboss::ajStrTokenAss;
*ajStrTokenClear = *Bio::Emboss::ajStrTokenClear;
package Bio::Emboss::Table;
*ajTableTrace = *Bio::Emboss::ajTableTrace;
*ajTablePut = *Bio::Emboss::ajTablePut;
*ajTableRemove = *Bio::Emboss::ajTableRemove;
*ajTableToarray = *Bio::Emboss::ajTableToarray;
*ajTableFree = *Bio::Emboss::ajTableFree;
*ajTableFetch = *Bio::Emboss::ajTableFetch;
*ajTableFetchKey = *Bio::Emboss::ajTableFetchKey;
*ajTableGetLength = *Bio::Emboss::ajTableGetLength;
*ajTableRemoveKey = *Bio::Emboss::ajTableRemoveKey;
*ajTablestrPrint = *Bio::Emboss::ajTablestrPrint;
*ajTablestrTrace = *Bio::Emboss::ajTablestrTrace;
*ajTablestrFree = *Bio::Emboss::ajTablestrFree;
*ajTablestrFreeKey = *Bio::Emboss::ajTablestrFreeKey;
*ajTablecharPrint = *Bio::Emboss::ajTablecharPrint;
*embWordPrintTable = *Bio::Emboss::embWordPrintTable;
*embWordPrintTableFI = *Bio::Emboss::embWordPrintTableFI;
*embWordPrintTableF = *Bio::Emboss::embWordPrintTableF;
*embWordFreeTable = *Bio::Emboss::embWordFreeTable;
*embWordGetTable = *Bio::Emboss::embWordGetTable;
*embWordBuildMatchTable = *Bio::Emboss::embWordBuildMatchTable;
*ajTableGet = *Bio::Emboss::ajTableGet;
*ajTableKey = *Bio::Emboss::ajTableKey;
*ajStrTableTrace = *Bio::Emboss::ajStrTableTrace;
*ajTableLength = *Bio::Emboss::ajTableLength;
*ajStrTablePrint = *Bio::Emboss::ajStrTablePrint;
*ajStrTablePrintC = *Bio::Emboss::ajStrTablePrintC;
*ajStrTableFree = *Bio::Emboss::ajStrTableFree;
package Bio::Emboss::Time;
*ajTimeTrace = *Bio::Emboss::ajTimeTrace;
*ajTimeSetS = *Bio::Emboss::ajTimeSetS;
*ajTimeDel = *Bio::Emboss::ajTimeDel;
*ajTimeNewTime = *Bio::Emboss::ajTimeNewTime;
*ajTimeGetTimetype = *Bio::Emboss::ajTimeGetTimetype;
*ajTimeSetC = *Bio::Emboss::ajTimeSetC;
*ajTimeSetLocal = *Bio::Emboss::ajTimeSetLocal;
*ajTimeMake = *Bio::Emboss::ajTimeMake;
package Bio::Emboss::Tree;
*ajTreestrCopy = *Bio::Emboss::ajTreestrCopy;
*ajTreeCopy = *Bio::Emboss::ajTreeCopy;
*ajTreeLength = *Bio::Emboss::ajTreeLength;
*ajTreestrLength = *Bio::Emboss::ajTreestrLength;
*ajTreeFree = *Bio::Emboss::ajTreeFree;
*ajTreestrFree = *Bio::Emboss::ajTreestrFree;
*ajTreeDel = *Bio::Emboss::ajTreeDel;
*ajTreestrDel = *Bio::Emboss::ajTreestrDel;
*ajTreeToArray = *Bio::Emboss::ajTreeToArray;
*ajTreestrToArray = *Bio::Emboss::ajTreestrToArray;
*ajTreeAddData = *Bio::Emboss::ajTreeAddData;
*ajTreeAddNode = *Bio::Emboss::ajTreeAddNode;
*ajTreeAddSubNode = *Bio::Emboss::ajTreeAddSubNode;
*ajTreeTrace = *Bio::Emboss::ajTreeTrace;
*ajTreestrAddData = *Bio::Emboss::ajTreestrAddData;
*ajTreestrTrace = *Bio::Emboss::ajTreestrTrace;
*ajTreeFollow = *Bio::Emboss::ajTreeFollow;
*ajTreeNext = *Bio::Emboss::ajTreeNext;
*ajTreePrev = *Bio::Emboss::ajTreePrev;
*ajTreeDown = *Bio::Emboss::ajTreeDown;
*ajTreeUp = *Bio::Emboss::ajTreeUp;
package Bio::Emboss::Trn;
*ajTrnDel = *Bio::Emboss::ajTrnDel;
*ajTrnReadFile = *Bio::Emboss::ajTrnReadFile;
*ajTrnCodon = *Bio::Emboss::ajTrnCodon;
*ajTrnRevCodon = *Bio::Emboss::ajTrnRevCodon;
*ajTrnCodonC = *Bio::Emboss::ajTrnCodonC;
*ajTrnRevCodonC = *Bio::Emboss::ajTrnRevCodonC;
*ajTrnCodonK = *Bio::Emboss::ajTrnCodonK;
*ajTrnRevCodonK = *Bio::Emboss::ajTrnRevCodonK;
*ajTrnC = *Bio::Emboss::ajTrnC;
*ajTrnRevC = *Bio::Emboss::ajTrnRevC;
*ajTrnAltRevC = *Bio::Emboss::ajTrnAltRevC;
*ajTrnStr = *Bio::Emboss::ajTrnStr;
*ajTrnRevStr = *Bio::Emboss::ajTrnRevStr;
*ajTrnAltRevStr = *Bio::Emboss::ajTrnAltRevStr;
*ajTrnSeq = *Bio::Emboss::ajTrnSeq;
*ajTrnRevSeq = *Bio::Emboss::ajTrnRevSeq;
*ajTrnAltRevSeq = *Bio::Emboss::ajTrnAltRevSeq;
*ajTrnCFrame = *Bio::Emboss::ajTrnCFrame;
*ajTrnStrFrame = *Bio::Emboss::ajTrnStrFrame;
*ajTrnSeqFrame = *Bio::Emboss::ajTrnSeqFrame;
*ajTrnSeqFramePep = *Bio::Emboss::ajTrnSeqFramePep;
*ajTrnCDangle = *Bio::Emboss::ajTrnCDangle;
*ajTrnStrDangle = *Bio::Emboss::ajTrnStrDangle;
*ajTrnSeqOrig = *Bio::Emboss::ajTrnSeqOrig;
*ajTrnGetTitle = *Bio::Emboss::ajTrnGetTitle;
*ajTrnGetFileName = *Bio::Emboss::ajTrnGetFileName;
*ajTrnStartStop = *Bio::Emboss::ajTrnStartStop;
*ajTrnStartStopC = *Bio::Emboss::ajTrnStartStopC;
package Bio::Emboss::Uint;
*ajUintDel = *Bio::Emboss::ajUintDel;
*ajUintGet = *Bio::Emboss::ajUintGet;
*ajUintPut = *Bio::Emboss::ajUintPut;
*ajUintInc = *Bio::Emboss::ajUintInc;
*ajUintDec = *Bio::Emboss::ajUintDec;
*ajUintUint = *Bio::Emboss::ajUintUint;
*ajUintLen = *Bio::Emboss::ajUintLen;
package Bio::Emboss::Uint2d;
*ajUint2dDel = *Bio::Emboss::ajUint2dDel;
*ajUint2dGet = *Bio::Emboss::ajUint2dGet;
*ajUint2dPut = *Bio::Emboss::ajUint2dPut;
*ajUint2dLen = *Bio::Emboss::ajUint2dLen;
*ajUint2dUint = *Bio::Emboss::ajUint2dUint;
package Bio::Emboss::Uint3d;
*ajUint3dDel = *Bio::Emboss::ajUint3dDel;
*ajUint3dGet = *Bio::Emboss::ajUint3dGet;
*ajUint3dPut = *Bio::Emboss::ajUint3dPut;
*ajUint3dLen = *Bio::Emboss::ajUint3dLen;
*ajUint3dUint = *Bio::Emboss::ajUint3dUint;
package Bio::Emboss::Vdwall;
*ajVdwallDel = *Bio::Emboss::ajVdwallDel;
package Bio::Emboss::Vdwres;
*ajVdwresDel = *Bio::Emboss::ajVdwresDel;
# --- list all methods of EMBOSS for the EXPORT :all tag
package Bio::Emboss::Methods;
@ALL_METHODS = qw(
embInitPerl
ajGraphInitPerl
ajAcdGetAlign
ajAcdGetArray
ajAcdGetBool
ajAcdGetCodon
ajAcdGetCpdb
ajAcdGetDatafile
ajAcdGetDirectory
ajAcdGetDirectoryName
ajAcdGetDirlist
ajAcdGetDiscretestates
ajAcdGetDiscretestatesSingle
ajAcdGetDistances
ajAcdGetFeat
ajAcdGetFeatout
ajAcdGetFilelist
ajAcdGetFloat
ajAcdGetFrequencies
ajAcdGetGraph
ajAcdGetGraphxy
ajAcdGetInfile
ajAcdGetInt
ajAcdGetList
ajAcdGetListSingle
ajAcdGetMatrix
ajAcdGetMatrixf
ajAcdGetOutcodon
ajAcdGetOutcpdb
ajAcdGetOutdata
ajAcdGetOutdir
ajAcdGetOutdirName
ajAcdGetOutdiscrete
ajAcdGetOutdistance
ajAcdGetOutfile
ajAcdGetOutfileall
ajAcdGetOutfreq
ajAcdGetOutmatrix
ajAcdGetOutmatrixf
ajAcdGetOutproperties
ajAcdGetOutscop
ajAcdGetOuttree
ajAcdGetPattern
ajAcdGetProperties
ajAcdGetRange
ajAcdGetRegexp
ajAcdGetRegexpSingle
ajAcdGetReport
ajAcdGetScop
ajAcdGetSelect
ajAcdGetSelectSingle
ajAcdGetSeq
ajAcdGetSeqall
ajAcdGetSeqout
ajAcdGetSeqoutall
ajAcdGetSeqoutset
ajAcdGetSeqset
ajAcdGetSeqsetall
ajAcdGetSeqsetallSingle
ajAcdGetString
ajAcdGetToggle
ajAcdGetTree
ajAcdGetTreeSingle
ajAcdGetValue
ajAcdSetControl
ajAcdGetCmdline
ajAcdGetInputs
ajAcdGetProgram
ajAcdPrintAppl
ajAcdPrintQual
ajAcdPrintType
ajAcdExit
ajAcdUnused
ajAcdGetDistancesSingle
ajAlignDefine
ajAlignDefineSS
ajAlignDefineCC
ajAlignDel
ajAlignReset
ajAlignOpen
ajAlignFormatDefault
ajAlignGetFilename
ajAlignGetFormat
ajAlignFindFormat
ajAlignValid
ajAlignNew
ajAlignWrite
ajAlignClose
ajAlignWriteHeader
ajAlignWriteTail
ajAlignSetHeader
ajAlignSetHeaderC
ajAlignSetHeaderApp
ajAlignSetTail
ajAlignSetTailC
ajAlignSetTailApp
ajAlignSetSubTail
ajAlignSetSubTailC
ajAlignSetSubTailApp
ajAlignSetSubHeader
ajAlignSetSubHeaderC
ajAlignSetSubHeaderApp
ajAlignSetSubHeaderPre
ajAlignSetMatrixName
ajAlignSetMatrixNameC
ajAlignSetMatrixInt
ajAlignSetMatrixFloat
ajAlignSetGapI
ajAlignSetGapR
ajAlignSetScoreI
ajAlignSetScoreL
ajAlignSetScoreR
ajAlignSetStats
ajAlignSetSubStandard
ajAlignSetType
ajAlignSetExternal
ajAlignSetRange
ajAlignSetSubRange
ajAlignTraceT
ajAlignTrace
ajAlignPrintFormat
ajAlignConsStats
ajAlignExit
ajAlignGetLen
ajChararrNew
ajChararrNewL
ajChararrDel
ajChararrGet
ajChararrPut
ajChararrChararr
ajIntNew
ajIntNewL
ajIntDel
ajIntGet
ajIntPut
ajIntInc
ajIntDec
ajIntInt
ajIntLen
ajFloatNew
ajFloatNewL
ajFloatDel
ajFloatGet
ajFloatPut
ajFloatFloat
ajFloatLen
ajDoubleNew
ajDoubleNewL
ajDoubleDel
ajDoubleGet
ajDoublePut
ajDoubleDouble
ajDoubleLen
ajShortNew
ajShortNewL
ajShortDel
ajShortGet
ajShortPut
ajShortShort
ajShortLen
ajLongNew
ajLongNewL
ajLongDel
ajLongGet
ajLongPut
ajLongLong
ajLongLen
ajFloatParse
ajFloatStr
ajFloatTrace
ajArrCommaList
ajArrIntLine
ajInt2dNew
ajInt2dNewL
ajInt2dNewLL
ajInt2dDel
ajInt2dGet
ajInt2dPut
ajInt2dLen
ajInt2dInt
ajInt3dNew
ajInt3dNewL
ajInt3dDel
ajInt3dGet
ajInt3dPut
ajInt3dLen
ajInt3dInt
ajFloat2dNew
ajFloat2dNewL
ajFloat2dDel
ajFloat2dGet
ajFloat2dPut
ajFloat2dLen
ajFloat2dFloat
ajFloat3dNew
ajFloat3dNewL
ajFloat3dDel
ajFloat3dGet
ajFloat3dPut
ajFloat3dLen
ajFloat3dFloat
ajDouble2dNew
ajDouble2dNewL
ajDouble2dDel
ajDouble2dGet
ajDouble2dPut
ajDouble2dLen
ajDouble2dDouble
ajDouble3dNew
ajDouble3dNewL
ajDouble3dDel
ajDouble3dGet
ajDouble3dPut
ajDouble3dLen
ajDouble3dDouble
ajShort2dNew
ajShort2dNewL
ajShort2dDel
ajShort2dGet
ajShort2dPut
ajShort2dLen
ajShort2dShort
ajShort3dNew
ajShort3dNewL
ajShort3dDel
ajShort3dGet
ajShort3dPut
ajShort3dLen
ajShort3dShort
ajLong2dNew
ajLong2dNewL
ajLong2dDel
ajLong2dGet
ajLong2dPut
ajLong2dLen
ajLong2dLong
ajLong3dNew
ajLong3dNewL
ajLong3dDel
ajLong3dGet
ajLong3dPut
ajLong3dLen
ajLong3dLong
ajArrExit
ajUintNew
ajUintNewL
ajUintDel
ajUintGet
ajUintPut
ajUintInc
ajUintDec
ajUintUint
ajUintLen
ajUint2dNew
ajUint2dNewL
ajUint2dNewLL
ajUint2dDel
ajUint2dGet
ajUint2dPut
ajUint2dLen
ajUint2dUint
ajUint3dNew
ajUint3dNewL
ajUint3dDel
ajUint3dGet
ajUint3dPut
ajUint3dLen
ajUint3dUint
ajArrDoubleLine
ajArrFloatLine
ajBaseCodes
ajAZToInt
ajIntToAZ
ajBinToAZ
ajAZToBin
ajAZToBinC
ajBaseInit
ajBaseAa1ToAa3
ajBaseProb
ajBaseExit
ajBaseAa3ToAa1
ajBaseComp
ajCall
ajCallExit
ajCodNew
ajCodNewCode
ajCodDup
ajCodDel
ajCodBacktranslate
ajCodBacktranslateAmbig
ajCodBase
ajCodCalcGribskov
ajCodCalcNc
ajCodCalculateUsage
ajCodClear
ajCodClearData
ajCodCountTriplets
ajCodIndex
ajCodIndexC
ajCodRead
ajCodSetBacktranslate
ajCodTriplet
ajCodWriteOut
ajCodWrite
ajCodComp
ajCodCalcCai
ajCodCaiW
ajCodCai
ajCodGetName
ajCodGetNameC
ajCodGetDesc
ajCodGetDescC
ajCodGetSpecies
ajCodGetSpeciesC
ajCodGetDivision
ajCodGetDivisionC
ajCodGetRelease
ajCodGetReleaseC
ajCodGetNumcodon
ajCodGetNumcds
ajCodGetCode
ajCodAssName
ajCodAssNameC
ajCodAssDesc
ajCodAssDescC
ajCodAssSpecies
ajCodAssSpeciesC
ajCodAssRelease
ajCodAssReleaseC
ajCodAssDivision
ajCodAssDivisionC
ajCodAssNumcodon
ajCodAssNumcds
ajCodAssCode
ajCodOutFormat
ajCodPrintFormat
ajCodGetCodonlist
ajCodExit
ajMeltInit
ajProbScore
ajMeltEnergy
ajTm
ajMeltGC
ajMeltEnergy2
ajTm2
ajProdTm
ajAnneal
ajMeltExit
ajDmxScophitNew
ajDmxScopalgNew
ajDmxScopalgRead
ajDmxScophitDel
ajDmxScophitDelWrap
ajDmxScopalgDel
ajDmxScophitListCopy
ajDmxScophitCopy
ajDmxScophitTargetLowPriority
ajDmxScophitTarget2
ajDmxScophitTarget
ajDmxScophitCheckTarget
ajDmxScophitCompScore
ajDmxScophitCompPval
ajDmxScophitCompAcc
ajDmxScophitCompSunid
ajDmxScophitCompSpr
ajDmxScophitCompEnd
ajDmxScophitCompStart
ajDmxScophitCompFam
ajDmxScophitCompSfam
ajDmxScophitCompClass
ajDmxScophitCompFold
ajDmxScopalgGetseqs
ajDmxScophitsWrite
ajDmxScophitsWriteFasta
ajDmxScophitReadFasta
ajDmxScopalgWrite
ajDmxScopalgWriteClustal
ajDmxScopalgWriteClustal2
ajDmxScopalgWriteFasta
ajDmxScopSeqFromSunid
ajDmxDummyFunction
ajCathReadAllNew
ajCathReadAllRawNew
ajCathReadCNew
ajCathReadNew
ajDomainReadAllNew
ajScopReadAllNew
ajScopReadAllRawNew
ajCathNew
ajDomainNew
ajScopNew
ajDomainReadNew
ajScopReadNew
ajDomainReadCNew
ajScopReadCNew
ajDomainDel
ajScopDel
ajCathDel
ajDomainCopy
ajCathCopy
ajScopCopy
ajScopMatchSunid
ajScopMatchScopid
ajScopMatchPdbId
ajCathMatchPdbId
ajDomainGetId
ajDomainGetSeqPdb
ajDomainGetSeqSpr
ajDomainGetPdb
ajDomainGetAcc
ajDomainGetSpr
ajDomainGetN
ajScopArrFindScopid
ajScopArrFindSunid
ajScopArrFindPdbid
ajCathArrFindPdbid
ajPdbWriteDomain
ajCathWrite
ajDomainWrite
ajScopWrite
ajDomainDCFType
ajDomainDummyFunction
ajFeattabOutOpen
ajFeattabOutFile
ajFeattabOutFilename
ajFeattabOutIsOpen
ajFeattabOutIsLocal
ajFeattabOutSet
ajFeattabInNew
ajFeattabInNewSS
ajFeattabInNewSSF
ajFeattabOutNew
ajFeattabOutSetBasename
ajFeattabOutNewSSF
ajFeatRead
ajFeatNew
ajFeatNewII
ajFeatNewIIRev
ajFeatNewProt
ajFeattabInDel
ajFeattableDel
ajFeatDel
ajFeatUfoWrite
ajFeattableWrite
ajFeatSortByType
ajFeatSortByStart
ajFeatSortByEnd
ajFeattableAdd
ajFeattableClear
ajFeatOutFormatDefault
ajFeatWrite
ajFeattableWriteGff
ajFeattableWriteDdbj
ajFeattableWriteEmbl
ajFeattableWriteGenbank
ajFeattableWriteSwiss
ajFeattableWritePir
ajFeattableGetName
ajFeattableGetTypeC
ajFeattableGetTypeS
ajFeattableIsNuc
ajFeattableIsProt
ajFeattableBegin
ajFeattableEnd
ajFeattableLen
ajFeattableSize
ajFeattabInClear
ajFeatLocToSeq
ajFeatGetLocs
ajFeatGetNote
ajFeatGetNoteC
ajFeatGetNoteCI
ajFeatGetNoteI
ajFeatGetTag
ajFeatGetType
ajFeatGetSource
ajFeatGetStart
ajFeatGetStrand
ajFeatGetEnd
ajFeatGetLength
ajFeatGetScore
ajFeatGetForward
ajFeatGetFrame
ajFeatGetTrans
ajFeatTest
ajFeatSetDescApp
ajFeatSetDesc
ajFeatSetScore
ajFeatSetStrand
ajFeattabInSetType
ajFeattabInSetTypeC
ajFeattabOutSetType
ajFeattabOutSetTypeC
ajFeatTagSetC
ajFeatTagSet
ajFeatTagAddCC
ajFeatTagAddC
ajFeatTagAdd
ajFeattableNew
ajFeatUfoRead
ajFeattableSetNuc
ajFeattableSetProt
ajFeattableReverse
ajFeatReverse
ajFeattableSetRange
ajFeattableNewDna
ajFeattableNewSeq
ajFeattableNewProt
ajFeattableCopy
ajFeatCopy
ajFeatTrace
ajFeatTagTrace
ajFeatTagIter
ajFeatTagval
ajFeattableTrace
ajFeatExit
ajFeatUnused
ajFeatIsLocal
ajFeatIsLocalRange
ajFeatIsChild
ajFeatIsMultiple
ajFeatIsCompMult
ajFeattabOutDel
ajFeattablePos
ajFeattablePosI
ajFeattablePosII
ajFeattableTrimOff
ajFeatTrimOffRange
ajFeatDefName
ajFeatPrintFormat
ajFeatLocMark
ajFeattableCopyLimit
ajFeattabOutClear
ajOutfileNew
ajDirNew
ajDirNewS
ajDirNewSS
ajDiroutNew
ajDiroutNewS
ajDiroutNewSS
ajDirName
ajDirExt
ajFileNew
ajFileNewInPipe
ajFileNewIn
ajFileNewInC
ajFileNewInList
ajFileNewApp
ajFileNewOut
ajFileNewOutC
ajFileNewOutD
ajFileNewOutDir
ajFileSetDir
ajFileHasDir
ajFileNewF
ajOutfileClose
ajOutfileDel
ajDirDel
ajDiroutDel
ajFileClose
ajFileOutClose
ajFileDataNew
ajFileDataNewC
ajFileDataDirNew
ajFileDataDirNewC
ajFileSeek
ajFileRead
ajFileReadUint
ajFileWrite
ajFileNext
ajFileReopen
ajFileReadLine
ajFileGetsTrimL
ajFileGetsTrim
ajFileGets
ajFileGetsL
ajFileUnbuffer
ajFileReadAppend
ajFileOutHeader
ajFileNameShorten
ajFileNameTrim
ajFileDataNewWrite
ajFileDir
ajFileDirPath
ajFileGetwd
ajFileDirUp
ajFileDirFix
ajFileExit
ajFileTrace
ajOutfileFile
ajOutfileFp
ajOutfileFormat
ajFileBuffSize
ajFileName
ajFileNameS
ajFileGetApp
ajFileGetName
ajFileStat
ajFileLength
ajFileTell
ajFileStdout
ajFileStderr
ajFileStdin
ajFileFp
ajFileEof
ajFileBuffNewIn
ajFileBuffNew
ajFileBuffNewFile
ajFileBuffSetFile
ajFileBuffNewS
ajFileBuffNewF
ajFileBuffNewDW
ajFileBuffNewDWE
ajFileBuffNewDC
ajFileBuffNewDF
ajFileNewDW
ajFileNewDWE
ajFileNewDF
ajFileNewDirF
ajFileNewDC
ajFileBuffNewInList
ajFileBuffDel
ajFileBuffGet
ajFileBuffGetStore
ajFileBuffGetStoreL
ajFileBuffGetL
ajFileBuffStripHtml
ajFileBuffLoadC
ajFileBuffLoadS
ajFileBuffEof
ajFileBuffEnd
ajFileBuffReset
ajFileBuffResetStore
ajFileBuffResetPos
ajFileBuffFix
ajFileBuffFreeClear
ajFileBuffClear
ajFileBuffClearStore
ajFileBuffNobuff
ajFileBuffBuff
ajFileBuffEmpty
ajFileBuffTrace
ajFileBuffTraceFull
ajFileBuffPrint
ajFileBuffIsBuffered
ajFileBuffFp
ajFileBuffFile
ajFileBuffLoad
ajFileNameDir
ajFileNameDirSet
ajFileNameDirSetC
ajFileNameExt
ajFileNameExtC
ajFileScan
ajFileTestSkip
ajFileDirTrim
ajFileExtnTrim
ajFileDirExtnTrim
ajFileTempName
ajFileWriteByte
ajFileWriteChar
ajFileWriteInt2
ajFileWriteInt4
ajFileWriteInt8
ajFileWriteStr
ajFileBuffStripHtmlPre
ajFileFileList
ajFileBuffGetTrim
ajFileNameValid
ajFmtPrint
ajFmtError
ajFmtPrintF
ajFmtPrintFp
ajFmtPrintCL
ajFmtStr
ajFmtPrintS
ajFmtPrintAppS
ajFmtString
ajFmtPrintSplit
ajFmtScanS
ajFmtScanC
ajFmtScanF
ajGraphSetDevice
ajGraphSetName
ajGraphLabel
ajGraphSetPenWidth
ajGraphOpenPlot
ajGraphOpenWin
ajGraphNewPage
ajGraphCloseWin
ajGraphOpen
ajGraphLabelYRight
ajGraphClose
ajGraphSet
ajGraphxySet
ajGraphDumpDevices
ajGraphTrace
ajGraphPlpDataTrace
ajGraphCircle
ajGraphPolyFill
ajGraphPoly
ajGraphTriFill
ajGraphTri
ajGraphDiaFill
ajGraphDia
ajGraphBoxFill
ajGraphBox
ajGraphRectFill
ajGraphRect
ajGraphSetBackWhite
ajGraphSetBackBlack
ajGraphColourBack
ajGraphColourFore
ajGraphSetFore
ajGraphCheckColour
ajGraphGetBaseColour
ajGraphGetBaseColourProt
ajGraphGetBaseColourNuc
ajGraphGetCharSize
ajGraphGetOut
ajGraphSetOri
ajGraphPlenv
ajGraphGetColour
ajGraphGetSubTitle
ajGraphGetSubTitleC
ajGraphGetTitle
ajGraphGetTitleC
ajGraphGetXTitle
ajGraphGetXTitleC
ajGraphGetYTitle
ajGraphGetYTitleC
ajGraphSetLineStyle
ajGraphSetFillPat
ajGraphSetCharScale
ajGraphLine
ajGraphLines
ajGraphDots
ajGraphSymbols
ajGraphTextLine
ajGraphText
ajGraphTextStart
ajGraphTextEnd
ajGraphTextMid
ajGraphVertBars
ajGraphHoriBars
ajGraphInitSeq
ajGraphSetOut
ajGraphSetOutC
ajGraphSetDir
ajGraphPlpDataSetLineType
ajGraphxySetXStart
ajGraphxySetXEnd
ajGraphxySetYStart
ajGraphxySetYEnd
ajGraphPlpDataSetColour
ajGraphSetYTitle
ajGraphSetYTitleC
ajGraphSetXTitle
ajGraphSetXTitleC
ajGraphSetTitle
ajGraphSetTitleC
ajGraphSetSubTitle
ajGraphSetSubTitleC
ajGraphPlpDataSetYTitle
ajGraphPlpDataSetYTitleC
ajGraphPlpDataSetXTitle
ajGraphPlpDataSetXTitleC
ajGraphxyDel
ajGraphPlpDataNew
ajGraphPlpDataSetXY
ajGraphPlpDataCalcXY
ajGraphxySetXRangeII
ajGraphxySetYRangeII
ajGraphPlpDataNewI
ajGraphDataAdd
ajGraphDataReplace
ajGraphNew
ajGraphxyNewI
ajGraphSetMulti
ajGraphPlpDataSetTitle
ajGraphPlpDataSetTitleC
ajGraphPlpDataSetSubTitle
ajGraphPlpDataSetSubTitleC
ajGraphSetFlag
ajGraphxySetOverLap
ajGraphxySetGaps
ajGraphxySetXBottom
ajGraphxySetXTop
ajGraphxySetYRight
ajGraphxySetYLeft
ajGraphxySetXTick
ajGraphxySetYTick
ajGraphxySetXLabel
ajGraphxySetYLabel
ajGraphSetTitleDo
ajGraphSetSubTitleDo
ajGraphxySetCirclePoints
ajGraphxySetJoinPoints
ajGraphxySetXLabelTop
ajGraphxySetYLabelLeft
ajGraphxySetXInvTicks
ajGraphxySetYInvTicks
ajGraphxySetXGrid
ajGraphxySetYGrid
ajGraphxySetMaxMin
ajGraphPlpDataSetMaxMin
ajGraphArrayMaxMin
ajGraphPlpDataSetMaxima
ajGraphPlpDataSetTypeC
ajGraphxyCheckMaxMin
ajGraphxyDisplay
ajGraphAddRect
ajGraphAddText
ajGraphAddLine
ajGraphPlpDataDel
ajGraphClear
ajGraphPlpDataAddRect
ajGraphPlpDataAddText
ajGraphPlpDataAddLine
ajGraphPrintType
ajGraphTextLength
ajGraphTextHeight
ajGraphDistPts
ajGraphSetDefCharSize
ajGraphFitTextOnLine
ajGraphPartCircle
ajComputeCoord
ajGraphDrawTextOnCurve
ajGraphRectangleOnCurve
ajGraphInfo
ajGraphFillRectangleOnCurve
ajGraphIsData
ajGraphUnused
ajGraphSetDesc
ajGraphSetTitlePlus
ajGraphDataReplaceI
ajGraphSetCharSize
ajGraphAddTextScale
ajGraphPlpDataAddTextScale
ajGraphSetPage
ajHistDisplay
ajHistClose
ajHistDelete
ajHistNew
ajHistNewG
ajHistSetMultiTitle
ajHistSetMultiTitleC
ajHistSetMultiXTitle
ajHistSetMultiXTitleC
ajHistSetMultiYTitle
ajHistSetMultiYTitleC
ajHistSetPtrToData
ajHistCopyData
ajHistSetTitleC
ajHistSetXAxisC
ajHistSetYAxisLeftC
ajHistSetYAxisRightC
ajBtreeCacheNewC
ajBtreeCacheDel
ajBtreeCacheRead
ajBtreeCacheSync
ajBtreeCacheWrite
ajBtreeCreateRootNode
ajBtreeFindInsert
ajBtreeIdNew
ajBtreeIdDel
ajBtreeInsertId
ajBtreeIdFromKey
ajBtreeWriteParams
ajBtreeReadParams
ajBtreeDeleteId
ajBtreeWildNew
ajBtreeWildDel
ajBtreeKeyWildNew
ajBtreeKeyWildDel
ajBtreeFindInsertW
ajBtreeIdFromKeyW
ajBtreeListFromKeyW
ajBtreeReplaceId
ajBtreeReadEntries
ajBtreeInsertDupId
ajBtreeDupFromKey
ajBtreePriNew
ajBtreePriDel
ajBtreeInsertKeyword
ajBtreePriFromKeyword
ajBtreeSecCacheNewC
ajBtreeInsertSecId
ajBtreeSecFromId
ajBtreeSecFindInsert
ajBtreeLockTest
ajBtreeSecLeafList
ajBtreeVerifyId
ajBtreeIdFromKeywordW
ajBtreeListFromKeywordW
ajBtreeHybNew
ajBtreeHybDel
ajBtreeHybFindInsert
ajBtreeHybInsertId
ajBtreeNumFindInsert
ajBtreeInsertNum
ajBtreeFreePriArray
ajBtreeFreeSecArray
ajBtreeHybLeafList
ajBtreeDumpHybKeys
ajListNew
ajListstrNew
ajListPush
ajListstrPush
ajListTrace
ajListstrTrace
ajListPop
ajListPeek
ajListstrPop
ajListstrPeek
ajListReverse
ajListstrReverse
ajListFree
ajListstrFree
ajListIterDone
ajListIterTrace
ajListstrIterTrace
ajListExit
ajListFreeData
ajListNewListref
ajListPushAppend
ajListPushlist
ajListPopLast
ajListGetLength
ajListPeekFirst
ajListPeekLast
ajListPeekNumber
ajListToarray
ajListUnused
ajListIterNew
ajListIterNewBack
ajListIterNewread
ajListIterNewreadBack
ajListIterDoneBack
ajListIterDel
ajListIterGet
ajListIterGetBack
ajListIterInsert
ajListIterRemove
ajListstrNewList
ajListstrNewListref
ajListstrPushAppend
ajListstrPushlist
ajListstrPopLast
ajListstrGetLength
ajListstrToarray
ajListstrToarrayAppend
ajListstrFreeData
ajListstrIterInsert
ajListstrIterRemove
ajRound
ajRoundF
ajRecToPol
ajPolToRec
ajDegToRad
ajRadToDeg
ajGaussProb
ajGeoMean
ajPosMod
ajRandomSeed
ajRandomNumber
ajRandomNumberD
ajSp64Crc
ajMathPos
ajMathPosI
ajSp32Crc
ajNumLengthDouble
ajNumLengthFloat
ajNumLengthInt
ajNumLengthUint
ajMatrixNew
ajMatrixNewAsym
ajMatrixfNew
ajMatrixfNewAsym
ajMatrixfDel
ajMatrixDel
ajMatrixArray
ajMatrixfArray
ajMatrixSize
ajMatrixfSize
ajMatrixCvt
ajMatrixfCvt
ajMatrixChar
ajMatrixfChar
ajMatrixName
ajMatrixfName
ajMatrixRead
ajMatrixfRead
ajMatrixSeqNum
ajMatrixfSeqNum
ajMatrixGetCodes
ajMatrixfGetCodes
ajMemAlloc
ajMemCalloc
ajMemCalloc0
ajMemFree
ajMemResize
ajMemArrB
ajMemArrI
ajMemArrF
ajMemStat
ajMemExit
ajMessInvokeDebugger
ajMessBeep
ajUser
ajMessOut
ajMessDump
ajMessErrorCount
ajErr
ajDie
ajWarn
ajMessExitmsg
ajMessCrashFL
ajMessCaughtMessage
ajMessSysErrorText
ajMessErrorInit
ajMessSetErr
ajMessErrorSetFile
ajMessOutCode
ajMessErrorCode
ajMessCrashCodeFL
ajMessCodesDelete
ajDebug
ajDebugFile
ajUserGet
ajMessExit
ajNamPrintDbAttr
ajNamPrintRsAttr
ajNamDbDetails
ajNamListOrigin
ajNamDebugOrigin
ajNamListDatabases
ajNamDebugDatabases
ajNamDebugResources
ajNamDebugVariables
ajNamListListDatabases
ajNamListListResources
ajNamVariables
ajNamIsDbname
ajNamGetenv
ajNamGetenvC
ajNamGetValue
ajNamGetValueC
ajNamDatabase
ajNamInit
ajNamExit
ajNamDbTest
ajNamDbGetUrl
ajNamDbGetDbalias
ajNamDbData
ajNamDbQuery
ajNamRootInstall
ajNamRootPack
ajNamRootVersion
ajNamRoot
ajNamRootBase
ajNamResolve
ajNamSetControl
ajNamRsAttrValue
ajNamRsAttrValueC
ajNamRsListValue
ajNexusParse
ajNexusNew
ajNexusDel
ajNexusTrace
ajNexusGetTaxa
ajNexusGetNtaxa
ajNexusGetSequences
ajPdbtospReadAllRawNew
ajPdbtospReadNew
ajPdbtospReadCNew
ajPdbtospReadAllNew
ajCmapReadINew
ajCmapReadCNew
ajCmapReadAllNew
ajCmapReadNew
ajVdwallReadNew
ajHetReadNew
ajHetReadRawNew
ajPdbReadFirstModelNew
ajPdbReadAllModelsNew
ajPdbReadNew
ajPdbReadoldNew
ajPdbReadoldFirstModelNew
ajAtomNew
ajResidueNew
ajChainNew
ajPdbNew
ajHetentNew
ajHetNew
ajVdwallNew
ajVdwresNew
ajCmapNew
ajPdbtospNew
ajAtomDel
ajResidueDel
ajChainDel
ajPdbDel
ajHetentDel
ajHetDel
ajVdwallDel
ajVdwresDel
ajCmapDel
ajPdbtospDel
ajAtomCopy
ajResidueCopy
ajAtomListCopy
ajResidueListCopy
ajPdbCopy
ajResidueSSEnv
ajResidueEnv1
ajResidueEnv2
ajResidueEnv3
ajResidueEnv4
ajResidueEnv5
ajResidueEnv6
ajResidueEnv7
ajResidueEnv8
ajResidueEnv9
ajResidueEnv10
ajResidueEnv11
ajResidueEnv12
ajResidueEnv13
ajResidueEnv14
ajResidueEnv15
ajResidueEnv16
ajPdbGetEStrideType
ajPdbChnidToNum
ajPdbtospArrFindPdbid
ajPdbWriteAll
ajPdbWriteSegment
ajHetWrite
ajPdbtospWrite
ajCmapWrite
ajPdbWriteDomainRecordRaw
ajPdbWriteRecordRaw
ajPdbWriteAllRaw
ajPdbWriteDomainRaw
ajPhyloDistNew
ajPhyloFreqNew
ajPhyloPropNew
ajPhyloStateNew
ajPhyloTreeNew
ajPhyloDistDel
ajPhyloFreqDel
ajPhyloPropDel
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ajPhyloDistRead
ajPhyloDistTrace
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ajPhyloFreqTrace
ajPhyloPropRead
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ajPhyloStateTrace
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ajPhyloTreeTrace
ajPhyloStateDelarray
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ajPhyloExit
ajRangeNewI
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ajRangeGet
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ajRangeFile
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ajReportSetHeaderC
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ajReportSetSubTailC
ajReportSetType
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ajReportDummyFunction
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ajReportAppendHeader
ajReportAppendHeaderC
ajReportAppendSubHeader
ajReportAppendSubHeaderC
ajReportAppendTail
ajReportAppendTailC
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ajReportAppendSubTailC
ajSeqNew
ajSeqNewNameC
ajSeqNewNameS
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ajSeqNewRangeS
ajSeqNewRes
ajSeqNewSeq
ajSeqAssignAccC
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ajSeqAssignEntryC
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ajSeqAssignFileC
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ajSeqAssignUfoC
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ajSeqAssignUsaC
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ajSeqGetAccC
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ajSeqGetBeginTrue
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ajSeqGetEnd
ajSeqGetEndTrue
ajSeqGetEntryC
ajSeqGetEntryS
ajSeqGetFeat
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ajSeqGetLen
ajSeqGetLenTrue
ajSeqGetNameC
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ajSeqGetSeqC
ajSeqGetSeqS
ajSeqGetSeqCopyC
ajSeqGetSeqCopyS
ajSeqGetSvC
ajSeqGetSvS
ajSeqGetTaxC
ajSeqGetTaxS
ajSeqGetUsaC
ajSeqGetUsaS
ajSeqIsNuc
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ajSeqCalcCheckgcg
ajSeqCalcCount
ajSeqCalcMolwt
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ajSeqSetName
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ajSeqGapFill
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ajSeqTraceTitle
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ajSeqallGetseqLen
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ajSeqsetGetOffend
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ajSeqsetGetBegin
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ajSeqsetGetNameC
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ajSeqsetGetseqAccC
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ajSeqsetGetseqNameC
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ajSeqsetGetseqSeqC
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ajSeqsetGetseqWeight
ajSeqstrConvertNum
ajSeqcvtTrace
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ajSeqcvtNewStrAsym
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ajSeqtestIsAccession
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ajSeqrefNew
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ajSeqABITest
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ajSeqoutNewFormatC
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ajSeqoutSetNameDefaultC
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ajStrIterNew
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ajStrTokenNewC
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ajStrTokenAssign
ajStrTokenAssignC
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ajStrTokenReset
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ajStrTokenNextFindC
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ajStrTokenNextParseC
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ajCharMatchWildCaseC
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ajCharMatchWildNextCaseC
ajCharMatchWildWordCaseC
ajCharCmpWildCase
ajStrKeepSetS
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ajStrExchangeSetRestCK
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ajStrIsCharsetC
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ajStrIsCharsetCaseC
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ajStrToUint
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ajStrMatchWildCaseC
ajStrMatchWildCaseS
ajStrMatchWildWordCaseC
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ajStrSuffixCaseC
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ajStrCmpWildCaseC
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ajStrFindRestC
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ajStrKeepSetAlphaRestC
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ajStrExchangePosCC
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ajSysCanon
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ajSysFuncStrtokR
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ajTableTrace
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ajTableNewLen
ajTableFetch
ajTableFetchKey
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ajTablestrNew
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ajTimeGetTimetype
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ajTimeSetC
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ajTrnDel
ajTrnNewC
ajTrnNewI
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ajTrnSeq
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ajTrnStartStopC
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ajTreeNew
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ajTreeDummyFunction
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ajTreeTrace
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ajTreestrAddData
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ajExitBad
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ajUtilCatch
ajReset
ajByteRevInt
ajByteRevLen2
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ajByteRevLen8
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ajByteRevUint
ajUtilGetBigendian
ajUtilGetUid
ajUtilLoginfo
aj3dVectorNew
aj3dVectorCreate
aj3dVectorDel
aj3dVectorCrossProduct
aj3dVectorBetweenPoints
aj3dVectorLength
aj3dVectorAngle
aj3dVectorDihedralAngle
aj3dVectorDotProduct
aj3dVectorSum
embComComplexity
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embConsCalc
embDataListDel
embDataListRead
embDataListGetTables
embDataListGetTable
embDbiFieldNew
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embDbiFileListExc
embDbiFlatOpenlib
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embDbiRmEntryFile
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embDbiHeaderSize
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embDbiFileIn
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embDbiFileIndex
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embDbiWriteEntryRecord
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embDbiMemEntry
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embDbiMemWriteEntry
embDbiSortWriteFields
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embDbiDateSet
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embDbiLogSource
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embDbiLogFile
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embDbiExit
embDmxScophitsToHitlist
embDmxScophitToHit
embDmxScophitsAccToHitlist
embDmxHitsWrite
embDmxScopToScophit
embDmxScopalgToScop
embDmxScophitsOverlapAcc
embDmxScophitsOverlap
embDmxScophitMerge
embDmxScophitMergeInsertOther
embDmxScophitMergeInsertOtherTarget
embDmxScophitMergeInsertOtherTargetBoth
embDmxScophitMergeInsertThis
embDmxScophitMergeInsertThisTarget
embDmxScophitMergeInsertThisTargetBoth
embDmxSeqNR
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embDmxSeqCompall
embDmxScophitReadAllFasta
embDmxHitlistToScophits
embScopToPdbid
embScopToSp
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embEstSetDebug
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embEstMatInit
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embEstShuffleSeq
embEstFreeAlign
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embEstOutBlastStyle
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embExit
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embGrpMakeNewGnode
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embGrpSortGroupsList
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embGrpCompareTwoGnodes
embGrpCompareTwoPnodes
embGrpOutputGroupsList
embGrpOutputProgsList
embGrpGroupsListDel
embGrpProgsListDel
embGrpKeySearchProgs
embGrpKeySearchSeeAlso
embGrpProgsMakeUnique
embGrpGroupMakeUnique
embGrpExit
embIepPhToHconc
embIepPhFromHconc
embIepPkToK
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embIepCompC
embIepCompS
embIepCalcK
embIepGetProto
embIepGetCharge
embIepPhConverge
embIepIepC
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embBtreeEmblKW
embBtreeEmblTX
embBtreeEmblAC
embBtreeEmblSV
embBtreeEmblDE
embBtreeGenBankAC
embBtreeGenBankKW
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embBtreeGenBankTX
embBtreeFastaDE
embBtreeReadDir
embBtreeEntryNew
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embBtreeSetFields
embBtreeSetDbInfo
embBtreeGetFiles
embBtreeWriteEntryFile
embBtreeGetRsInfo
embBtreeOpenCaches
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embBtreeDumpParameters
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embNmerGetNoElements
embPatlistSeqSearch
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embPatternRegexSearch
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embPatternSeqCompile
embPdbidToSp
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embAtomInContact
embAtomDistance
embVdwRad
embPdbToIdx
embPdbListHeterogens
embPdbResidueIndexI
embPdbResidueIndexC
embPdbResidueIndexICA
embPdbResidueIndexCCA
embStrideToThree
embPropAminoRead
embPropCalcMolwt
embPropCalcMolwtMod
embPropCalcMolextcoeff
embPropCharToThree
embPropIntToThree
embPropCalcFragments
embPropProtGaps
embPropProt1to3
embPropPurine
embPropPyrimidine
embPropTransversion
embPropTransition
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embReadAminoDataDoubleC
embReadAminoDataFloatC
embReadAminoDataIntC
embShowNew
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embShowAddSeq
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embShowAddTicknum
embShowAddComp
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embWordLength
embWordClear
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embWordPrintTableFI
embWordPrintTableF
embWordFreeTable
embWordMatchListDelete
embWordMatchListPrint
embWordMatchListConvToFeat
embWordGetTable
embWordBuildMatchTable
embWordMatchMin
embWordMatchIter
embWordUnused
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ajAcdGetListI
ajAcdGetSelectI
ajAcdGetSeqsetallI
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ajAcdProgram
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ajAcdStdout
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ajHistSetBlackandWhite
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ajListNewArgs
ajListstrNewArgs
ajListNodesNew
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ajListFirst
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ajListLength
ajListstrLength
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ajListToArray
ajListstrToArray
ajListstrToArrayApp
ajListIter
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ajListIterBackDone
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ajListPushList
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ajSeqallReverse
ajSeqallToLower
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ajSeqAssAcc
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ajSeqBegin
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ajSeqCopyFeat
ajSeqCount
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ajSeqLen
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ajSeqMW
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ajSeqNewC
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ajSeqNewRange
ajSeqNewRangeCI
ajSeqNewStr
ajSeqOffset
ajSeqOffend
ajSeqPos
ajSeqPosI
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ajSeqReplace
ajSeqReplaceC
ajSeqRev
ajSeqReverse
ajSeqReverseStr
ajSeqRevOnly
ajSeqSetRangeDir
ajSeqStr
ajSeqStrCopy
ajSeqToLower
ajSeqToUpper
ajSeqTrueBegin
ajSeqTrueEnd
ajSeqTrueLen
ajSeqTruePos
ajSeqTruePosI
ajSeqTruePosII
ajSeqCalcCrc
ajSeqallBegin
ajSeqallEnd
ajSeqallLen
ajSeqallGetNameSeq
ajSeqallGetRange
ajSeqsetToLower
ajSeqsetToUpper
ajSeqsetAcc
ajSeqsetBegin
ajSeqsetEnd
ajSeqsetLen
ajSeqsetGetName
ajSeqsetName
ajSeqsetSeq
ajSeqsetGetSeq
ajSeqsetGetSeqArray
ajSeqsetSize
ajSeqsetTotweight
ajSeqsetWeight
ajSeqMod
ajSeqTraceT
ajSeqNum
ajSeqNumS
ajSeqCvtTrace
ajSeqCvtNewZero
ajSeqCvtNewZeroS
ajSeqCvtNewZeroSS
ajSeqCvtNew
ajSeqCvtDel
ajSeqCvtNewText
ajSeqCvtLen
ajSeqCvtK
ajSeqCvtKS
ajSeqCvtKSRow
ajSeqGapCount
ajSeqGapCountS
ajSeqGapStandardS
ajSeqFill
ajSeqDefName
ajIsAccession
ajIsSeqversion
ajSeqstrComplementOnly
ajSeqAllWrite
ajSeqsetWrite
ajSeqWriteClose
ajSeqWrite
ajSeqFileNewOut
ajSeqOutFormatSingle
ajSeqOutSetFormat
ajSeqOutSetFormatC
ajSeqOutFormatDefault
ajSeqoutUsa
ajSeqPrintOutFormat
ajSeqFindOutFormat
ajSeqoutCheckGcg
ajSeqoutDefName
ajSeqoutCount
ajSeqWriteXyz
ajSssWriteXyz
ajSeqWriteExit
ajCharFree
ajCharNew
ajCharNewL
ajCharNewLS
ajCharPos
ajCharToLower
ajCharToUpper
ajStrApp
ajStrAppC
ajStrAppCI
ajStrAppK
ajStrAppKI
ajStrAppSub
ajStrArrayDel
ajStrAss
ajStrAssC
ajStrAssCI
ajStrAssCL
ajStrAssI
ajStrAssK
ajStrAssL
ajStrAssS
ajStrAssSub
ajStrAssSubC
ajStrBlock
ajStrChar
ajStrChomp
ajStrChompC
ajStrChompEnd
ajStrChop
ajStrClean
ajStrCleanWhite
ajStrClear
ajStrCmpCase
ajStrCmpCaseCC
ajStrCmp
ajStrCmpO
ajStrCmpWild
ajStrCmpWildCC
ajStrConvert
ajStrConvertCC
ajStrCopy
ajStrCopyC
ajStrCountC
ajStrCountK
ajStrCut
ajStrDegap
ajStrDelim
ajStrDelReuse
ajStrDup
ajStrFind
ajStrFindCase
ajStrFindK
ajStrFill
ajStrFix
ajStrFixI
ajStrFromDoubleE
ajStrInsert
ajStrIsSpace
ajStrIter
ajStrIterBack
ajStrIterBackNext
ajStrIterFree
ajStrKeepAlphaC
ajStrKeepC
ajStrLen
ajStrListToArray
ajStrMatch
ajStrMatchCase
ajStrMatchCaseCC
ajStrMatchCC
ajStrMatchWild
ajStrMatchWildCC
ajStrMatchWildCO
ajStrMatchWord
ajStrMatchWordCC
ajStrMod
ajStrModL
ajStrModMinL
ajStrNCmpC
ajStrNCmpCaseCC
ajStrNCmpO
ajStrNewCIL
ajStrNewCL
ajStrNewL
ajStrNull
ajStrParentheses
ajStrPos
ajStrPosI
ajStrPosII
ajStrPrefix
ajStrPrefixCC
ajStrPrefixCase
ajStrPrefixCaseCC
ajStrPrefixCaseCO
ajStrPrefixCO
ajStrQuote
ajStrReplace
ajStrReplaceC
ajStrReplaceK
ajStrReplaceS
ajStrRef
ajStrRemoveCharsC
ajStrRemoveNewline
ajStrRev
ajStrRFindC
ajStrRoom
ajStrSet
ajStrSetC
ajStrSize
ajStrStr
ajStrStrMod
ajStrSub
ajStrSubstitute
ajStrSubstituteCC
ajStrSubstituteKK
ajStrSuffix
ajStrSuffixCC
ajStrSuffixCO
ajStrTok
ajStrTokC
ajStrTokCC
ajStrToken
ajStrTokenAss
ajStrTokenClear
ajStrTokenCount
ajStrTokenCountR
ajStrTokenInit
ajStrTokenRest
ajStrToLower
ajStrToLowerII
ajStrToTitle
ajStrToUpper
ajStrToUpperII
ajStrTrim
ajStrTruncate
ajStrWildPrefix
ajStrWrap
ajStrWrapLeft
ajStrUncomment
ajStrUncommentStart
ajSysBasename
ajSysItoC
ajSysItoUC
ajSysWhich
ajSystem
ajSysUnlink
ajSysArglist
ajSysArgListFree
ajSysFdopen
ajSysStrdup
ajSysIsRegular
ajSysIsDirectory
ajSysStrtok
ajSysStrtokR
ajSysFgets
ajSysFopen
ajTableGet
ajTableKey
ajStrTableTrace
ajTableLength
ajStrTableNewCaseC
ajStrTableNewCase
ajStrTableNewC
ajStrTableNew
ajStrTableHashCaseC
ajStrTableHashCase
ajStrTableHashC
ajStrTableHash
ajStrTableCmpCaseC
ajStrTableCmpCase
ajStrTableCmpC
ajStrTableCmp
ajStrTablePrint
ajStrTablePrintC
ajStrTableFree
ajTimeTodayRef
ajTimeToday
ajTimeTodayF
ajTimeTodayRefF
ajTimeSet
ajTimeLocal
ajTimeMake
ajLogInfo
ajUtilUid
ajUtilBigendian
ajUtilRev2
ajUtilRev4
ajUtilRev8
ajUtilRevShort
ajUtilRevInt
ajUtilRevLong
ajUtilRevUint
);
# --- list ajAcdGet... methods of EMBOSS for the EXPORT :acd tag
@ACD_METHODS = qw(
ajAcdGetAlign
ajAcdGetArray
ajAcdGetBool
ajAcdGetCodon
ajAcdGetCpdb
ajAcdGetDatafile
ajAcdGetDirectory
ajAcdGetDirectoryName
ajAcdGetDirlist
ajAcdGetDiscretestates
ajAcdGetDiscretestatesSingle
ajAcdGetDistances
ajAcdGetFeat
ajAcdGetFeatout
ajAcdGetFilelist
ajAcdGetFloat
ajAcdGetFrequencies
ajAcdGetGraph
ajAcdGetGraphxy
ajAcdGetInfile
ajAcdGetInt
ajAcdGetList
ajAcdGetListSingle
ajAcdGetMatrix
ajAcdGetMatrixf
ajAcdGetOutcodon
ajAcdGetOutcpdb
ajAcdGetOutdata
ajAcdGetOutdir
ajAcdGetOutdirName
ajAcdGetOutdiscrete
ajAcdGetOutdistance
ajAcdGetOutfile
ajAcdGetOutfileall
ajAcdGetOutfreq
ajAcdGetOutmatrix
ajAcdGetOutmatrixf
ajAcdGetOutproperties
ajAcdGetOutscop
ajAcdGetOuttree
ajAcdGetPattern
ajAcdGetProperties
ajAcdGetRange
ajAcdGetRegexp
ajAcdGetRegexpSingle
ajAcdGetReport
ajAcdGetScop
ajAcdGetSelect
ajAcdGetSelectSingle
ajAcdGetSeq
ajAcdGetSeqall
ajAcdGetSeqout
ajAcdGetSeqoutall
ajAcdGetSeqoutset
ajAcdGetSeqset
ajAcdGetSeqsetall
ajAcdGetSeqsetallSingle
ajAcdGetString
ajAcdGetToggle
ajAcdGetTree
ajAcdGetTreeSingle
ajAcdGetValue
ajAcdGetCmdline
ajAcdGetInputs
ajAcdGetProgram
ajAcdGetDistancesSingle
ajAcdGetDiscretestatesI
ajAcdGetListI
ajAcdGetSelectI
ajAcdGetSeqsetallI
ajAcdGetTreeI
);
1;