This module is an interface to the libraries of the EMBOSS package (European Molecular Biology Open Software Suite).
With this module you can access EMBOSS databases and use EMBOSS functions to manipulate your data. You can write perl programs that look like any other EMBOSS program (command-line, web interface).
INSTALLATION
You must define EMB_ROOT -- EMBOSS installation path
Probably also EMB_EXT_LIBS -- libraries used for building EMBOSS
You can do this by modifying Makefile.PL or putting the proper values on the command-line together with Makefile.PL:
perl Makefile.PL [EMB_ROOT=/some/path] [EMB_EXT_LIBS="-L/abc -lxyz"] make
make test # optional
perl t/seqret.pl -help # optional
perl t/graphtest.pl # optional
make epods # optional,
# creates ajax documentation in
# perl POD format
# % perldoc Bio::Emboss::Ajax
make install
DEPENDENCIES
This module requires an EMBOSS installation
available for download at
http://emboss.sourceforge.net/
The module was tested with EMBOSS (version 5.0.0).
For EMBOSS-4.1.0 use Bio::Emboss-4.1.0
For EMBOSS-4.0.0 use Bio::Emboss-2.0.0
For EMBOSS-3.0.0 use Bio::Emboss-1.0.1
For older EMBOSS versions use Bio::Emboss-0.7.
COPYRIGHT AND LICENCE
Copyright (C) 2003-2007 Peter Ernst <pernst@cpan.org>
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself.