Bio-Graphics documentation

• Bio-Graphics - README
• Bio-Graphics - Changes
• Bio-Graphics - META.yml
• Bio-Graphics Build.PL
• Bio-Graphics Makefile.PL
• Bio::Graphics - Generate GD images of Bio::Seq objects  [view source]
• Bio::Graphics::ConfiguratorI - A sectioned map of configuration  [view source]
• Bio::Graphics::DrawTransmembrane - draw a cartoon of an Alpha-helical transmembrane protein.  [view source]
• Bio::Graphics::Feature - A simple feature object for use with Bio::Graphics::Panel  [view source]
• Bio::Graphics::FeatureBase - Compatibility module  [view source]
• Bio::Graphics::FeatureDir - A directory of feature files and conf files  [view source]
• Bio::Graphics::FeatureFile - A set of Bio::Graphics features, stored in a file  [view source]
• Bio::Graphics::FeatureFile::Iterator - Iterator across a Bio::Graphics::FeatureFile  [view source]
• Bio::Graphics::Glyph - Base class for Bio::Graphics::Glyph objects  [view source]
• Bio::Graphics::Glyph::alignment - The "alignment" glyph  [view source]
• Bio::Graphics::Glyph::allele_tower - The "allele_tower" glyph  [view source]
• Bio::Graphics::Glyph::anchored_arrow - The "anchored_arrow" glyph  [view source]
• Bio::Graphics::Glyph::arrow - the "arrow" glyph  [view source]
• Bio::Graphics::Glyph::box - The "box" glyph  [view source]
• Bio::Graphics::Glyph::broken_line - The "broken line" glyph  [view source]
• Bio::Graphics::Glyph::cds - The "cds" glyph  [view source]
• Bio::Graphics::Glyph::christmas_arrow - The "christmas arrow" glyph  [view source]
• Bio::Graphics::Glyph::cross  [view source]
• Bio::Graphics::Glyph::crossbox - The "crossbox" glyph  [view source]
• Bio::Graphics::Glyph::dashed_line - The "dashed line" glyph  [view source]
• Bio::Graphics::Glyph::diamond - The "diamond" glyph  [view source]
• Bio::Graphics::Glyph::dna - The "dna" glyph  [view source]
• Bio::Graphics::Glyph::dot - The "dot" glyph  [view source]
• Bio::Graphics::Glyph::dumbbell - A glyph that draws a "dumbbell" with the same shapes on both ends.  [view source]
• Bio::Graphics::Glyph::ellipse - The "ellipse" glyph  [view source]
• Bio::Graphics::Glyph::ex - the "ex", or "crossed box" glyph  [view source]
• Bio::Graphics::Glyph::extending_arrow - The "extending arrow" glyph  [view source]
• Bio::Graphics::Glyph::Factory - Factory for Bio::Graphics::Glyph objects  [view source]
• Bio::Graphics::Glyph::fixedwidth - A base class fixed width glyphs  [view source]
• Bio::Graphics::Glyph::flag - the "flag" glyph  [view source]
• Bio::Graphics::Glyph::gene - A GFF3-compatible gene glyph  [view source]
• Bio::Graphics::Glyph::generic - The "generic" glyph  [view source]
• Bio::Graphics::Glyph::graded_segments - The "graded_segments" glyph  [view source]
• Bio::Graphics::Glyph::group - The "group" glyph  [view source]
• Bio::Graphics::Glyph::hat - The "hat" glyph  [view source]
• Bio::Graphics::Glyph::heat_map - The "heat_map" glyph  [view source]
• Bio::Graphics::Glyph::heat_map_ideogram - The "heat_map_ideogram" glyph  [view source]
• Bio::Graphics::Glyph::heterogeneous_segments - The "heterogeneous_segments" glyph  [view source]
• Bio::Graphics::Glyph::hidden - The "hidden" glyph  [view source]
• Bio::Graphics::Glyph::hybrid_plot - An xyplot plot drawing dual graph using data from two wiggle files per track  [view source]
• Bio::Graphics::Glyph::ideogram - The "ideogram" glyph  [view source]
• Bio::Graphics::Glyph::image - A glyph that draws photographs & other images  [view source]
• Bio::Graphics::Glyph::lightning - The "lightning" glyph  [view source]
• Bio::Graphics::Glyph::line - The "line" glyph  [view source]
• Bio::Graphics::Glyph::merge_parts - a base class which suppors semantic zooming of scored alignment features  [view source]
• Bio::Graphics::Glyph::merged_alignment - The "merged_alignment" glyph  [view source]
• Bio::Graphics::Glyph::minmax - The minmax glyph  [view source]
• Bio::Graphics::Glyph::operon - The "polycistronic operon" glyph  [view source]
• Bio::Graphics::Glyph::oval - The "oval" glyph  [view source]
• Bio::Graphics::Glyph::pairplot - The "pairwise plot" glyph  [view source]
• Bio::Graphics::Glyph::pentagram - The "pentagram" glyph  [view source]
• Bio::Graphics::Glyph::phylo_align - The "phylogenetic alignment" glyph  [view source]
• Bio::Graphics::Glyph::pinsertion - The "Drosophila P-element Insertion" glyph  [view source]
• Bio::Graphics::Glyph::primers - The "STS primers" glyph  [view source]
• Bio::Graphics::Glyph::processed_transcript - The sequence ontology transcript glyph  [view source]
• Bio::Graphics::Glyph::protein - The "protein" glyph  [view source]
• Bio::Graphics::Glyph::ragged_ends - The "ragged ends" glyph  [view source]
• Bio::Graphics::Glyph::read_pair  [view source]
• Bio::Graphics::Glyph::redgreen_box - The "redgreen_box" glyph  [view source]
• Bio::Graphics::Glyph::redgreen_segment - The "redgreen_segments" glyph  [view source]
• Bio::Graphics::Glyph::repeating_shape - A glyph that draws the same shape repeatedly.  [view source]
• Bio::Graphics::Glyph::rndrect - The "round rect" glyph  [view source]
• Bio::Graphics::Glyph::ruler_arrow - glyph for drawing an arrow as ruler (5' and 3' are marked as label)  [view source]
• Bio::Graphics::Glyph::saw_teeth - The "saw teeth" glyph  [view source]
• Bio::Graphics::Glyph::segmented_keyglyph - The "segmented_keyglyph" glyph  [view source]
• Bio::Graphics::Glyph::segments - The "segments" glyph  [view source]
• Bio::Graphics::Glyph::smoothing  [view source]
• Bio::Graphics::Glyph::so_transcript - The sequence ontology transcript glyph  [view source]
• Bio::Graphics::Glyph::span - The "span" glyph  [view source]
• Bio::Graphics::Glyph::spectrogram - The "spectrogram" glyph  [view source]
• Bio::Graphics::Glyph::splice_site - The "splice_site" glyph  [view source]
• Bio::Graphics::Glyph::stackedplot - The stackedplot glyph  [view source]
• Bio::Graphics::Glyph::ternary_plot - Draw ternary plot data  [view source]
• Bio::Graphics::Glyph::text_in_box - The "text in box" glyph  [view source]
• Bio::Graphics::Glyph::three_letters - DAS-compatible package to use for drawing a line of groups of three letters  [view source]
• Bio::Graphics::Glyph::tic_tac_toe - The "tic-tac-toe" glyph  [view source]
• Bio::Graphics::Glyph::toomany - The "too many to show" glyph  [view source]
• Bio::Graphics::Glyph::trace - A glyph that visualizes a trace file  [view source]
• Bio::Graphics::Glyph::track - The "track" glyph  [view source]
• Bio::Graphics::Glyph::transcript - The "transcript" glyph  [view source]
• Bio::Graphics::Glyph::transcript2 - The "transcript2" glyph  [view source]
• Bio::Graphics::Glyph::translation - The "6-frame translation" glyph  [view source]
• Bio::Graphics::Glyph::triangle - The "triangle" glyph  [view source]
• Bio::Graphics::Glyph::two_bolts - The "two bolts" glyph  [view source]
• Bio::Graphics::Glyph::vista_plot - The "vista_plot" glyph  [view source]
• Bio::Graphics::Glyph::wave - The "wave" glyph  [view source]
• Bio::Graphics::Glyph::weighted_arrow - The "weighted arrow" glyph  [view source]
• Bio::Graphics::Glyph::whiskerplot - The whiskerplot glyph  [view source]
• Bio::Graphics::Glyph::wiggle_box - A generic box glyph compatible with dense "wig"data  [view source]
• Bio::Graphics::Glyph::wiggle_density - A density plot compatible with dense "wig"data  [view source]
• Bio::Graphics::Glyph::wiggle_minmax  [view source]
• Bio::Graphics::Glyph::wiggle_whiskers  [view source]
• Bio::Graphics::Glyph::wiggle_xyplot - An xyplot plot compatible with dense "wig"data  [view source]
• Bio::Graphics::Glyph::xyplot - The xyplot glyph  [view source]
• Bio::Graphics::Layout  [view source]
• Bio::Graphics::Panel - Generate GD images of Bio::Seq objects  [view source]
• Bio::Graphics::Pictogram - generate SVG output of Pictogram display for consensus motifs  [view source]
• Bio::Graphics::RendererI - A renderer for the Bio::Graphics class that  [view source]
• Bio::Graphics::Util - non-object-oriented utilities used in Bio::Graphics modules  [view source]
• Bio::Graphics::Wiggle - Binary storage for dense genomic features  [view source]
• Bio::Graphics::Wiggle::Loader - Bio::Graphics::Wiggle::Loader documentation  [view source]