Bio::Search::HSP::hmmer3HSP - DESCRIPTION of Object

BioPerl documentation Contained in the BioPerl distribution.

Index

Code Index:

NAME

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Bio::Search::HSP::hmmer3HSP - DESCRIPTION of Object

SYNOPSIS

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Give standard usage here

DESCRIPTION

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Describe the object here

FEEDBACK

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Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

  https://redmine.open-bio.org/projects/bioperl/

AUTHOR - Thomas Sharpton

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Email thomas.sharpton@gmail.com

Describe contact details here

CONTRIBUTORS

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Additional contributors names and emails here

APPENDIX

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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

new

 Title   : new
 Usage   : my $obj = new Bio::Search::HSP::hmmer3HSP();
 Function: Builds a new Bio::Search::HSP::hmmer3HSP object 
 Returns : an instance of Bio::Search::HSP::hmmer3HSP
 Args    :

get_aln

 Title   : get_aln
 Usage   : my $aln = $hsp->gel_aln
 Function: Returns a Bio::SimpleAlign representing the HSP alignment
 Returns : Bio::SimpleAlign
 Args    : none
BioPerl documentation Contained in the BioPerl distribution. 
# $Id: bioperl.lisp 15559 2009-02-23 12:11:20Z maj $
#
# BioPerl module for Bio::Search::HSP::hmmer3HSP
#
# Please direct questions and support issues to <bioperl-l@bioperl.org>
#
# Cared for by Thomas Sharpton <thomas.sharpton@gmail.com>
#
# Copyright Thomas Sharpton
#
# You may distribute this module under the same terms as perl itself

# POD documentation - main docs before the code



# Let the code begin...


package Bio::Search::HSP::hmmer3HSP;
use strict;

use base qw(Bio::Search::HSP::GenericHSP);


sub new {
  my($class,@args) = @_;

  my $self = $class->SUPER::new(@args);
  return $self;
}


sub get_aln {
    my ($self) = shift;
    $self->warn("Inappropriate to build a Bio::SimpleAlign from a HMMER HSP object");
    return;
}

1;