Bio::SeqFeature::Gene::NC_Feature - superclass for non-coding features

BioPerl documentation Contained in the BioPerl distribution.

Index

Code Index:

NAME

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Bio::SeqFeature::Gene::NC_Feature.pm - superclass for non-coding features

SYNOPSIS

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Give standard usage here

DESCRIPTION

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Describe the object here

FEEDBACK

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Mailing Lists

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the Bioperl mailing list. Your participation is much appreciated.

  bioperl-l@bioperl.org                  - General discussion
  http://bioperl.org/wiki/Mailing_lists  - About the mailing lists

Support

Please direct usage questions or support issues to the mailing list:

bioperl-l@bioperl.org

rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible.

Reporting Bugs

Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the web:

  https://redmine.open-bio.org/projects/bioperl/

AUTHOR - David Block

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Email dblock@gnf.org

APPENDIX

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The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

is_coding

 Title   : is_coding
 Usage   : if ($feature->is_coding()) {
                     #do something
            }
 Function: Whether or not the feature codes for amino acid.
 Returns : FALSE
 Args    : none

cds

 Title   : cds
 Usage   : $cds=$feature->cds();
 Function: get the coding sequence of this feature
 Returns : undef
 Args    : none
BioPerl documentation Contained in the BioPerl distribution. 
#
# BioPerl module for Bio::SeqFeature::Gene::NC_Feature.pm
#
# Please direct questions and support issues to <bioperl-l@bioperl.org> 
#
# Cared for by David Block <dblock@gene.pbi.nrc.ca>
#
# Copyright David Block
#
# You may distribute this module under the same terms as perl itself

# POD documentation - main docs before the code



# Let the code begin...

package Bio::SeqFeature::Gene::NC_Feature;
use strict;

# Object preamble - inherits from Bio::Root::Root


use base qw(Bio::SeqFeature::Generic);

sub new {
    my($class,@args) = @_;
    
    my $self = $class->SUPER::new(@args);

    my ($is_coding) =
	$self->_rearrange([qw(IS_CODING)],@args);
    # default is non-coding
    $self->is_coding(defined($is_coding) ? $is_coding : 0);

    return $self;
}




sub is_coding{
    my $self = shift;

    return $self->{'is_coding'} = shift if @_;
    return $self->{'is_coding'};
}


sub cds {
   my ($self,@args) = @_;
   return;

}


1;