Bio::SeqIO::gbxml - GenBank sequence input/output stream using SAX

It is probably best not to use this object directly, but rather go through the SeqIO handler system. To read a GenBank XML file:

   $stream = Bio::SeqIO->new( -file => $filename, -format => 'gbxml');

   while ( my $bioSeqObj = $stream->next_seq() ) {
	# do something with $bioSeqObj
   }

To write a Seq object to the current file handle in GenBank XML format:

   $stream->write_seq( -seq => $seqObj);

If instead you would like a XML::DOM object containing the GBXML, use:

   my $newXmlObject = $stream->to_bsml( -seq => $seqObj);

In addition to parts of the Bio:: hierarchy, this module uses:

XML::SAX

This object can transform Bio::Seq objects to and from GenBank XML flatfiles.

User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated.

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 https://redmine.open-bio.org/projects/bioperl/

Email golharam-at-umdnj-dot-edu

Title : next_seq Usage : my $bioSeqObj = $stream->next_seq Function: Retrieves the next sequence from a SeqIO::gbxml stream. Returns : A reference to a Bio::Seq::RichSeq object Args :