Bio::Tools::AlignFactory - Base object for alignment factories

You wont be using this as an object, but using a dervied class like Bio::Tools::pSW

Holds common Alignment Factory attributes in place

http://bio.perl.org/ or birney@sanger.ac.uk

The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _

 Title     : kbyte()
 Usage     : set/gets the amount of memory able to be used
 Function  : 
           : $factory->kbyte(200);
           :
 Returns   : 
 Argument  : memory in kilobytes

 Title     : report()
 Usage     : set/gets the report boolean to issue reports or not
 Function  : 
           : $factory->report(1); # reporting goes on
           :
 Returns   : n/a
 Argument  : 1 or 0

 Title   : set_memory_and_report
 Usage   : Only used by subclasses.
 Function:
 Example :
 Returns : 
 Args    :