- (version 1.28)
- Boulder::Store fixes from Aaron Wangberg
Mon Feb 4 17:52:03 EST 2002
- (Version 1.27)
- Batch entrez queries work again using semi-published, semi-private interface
The problem with the published interface is there's no way to pass a list of
Genbank ACCESSION numbers, just GI numbers. So I have to use the XML demo.
- Patches from Michael Peterson to fix BLAST parsing.
Thu Jan 24 14:21:02 EST 2002
- (Version 1.26)
- Partial fix for Entrez retrieval, but Entrez queries don't work :-(
2001-12-28 Lincoln Stein <lstein@cshl.org>
- (version 1.25)
- fixed GB_Stone bugs that prevented parsing of some of the feature fields
- fixed Boulder/Genbank bugs that prevented parsing of some newer genbank
entries that use the ORIGIN field.
- fixed problems parsing genomic entries that contain gaps.
2001-06-14 Lincoln Stein <lstein@cshl.org>
2001-06-13 Lincoln Stein <lstein@cshl.org>
2001-06-11 Lincoln Stein <lstein@cshl.org>
- (version 1.22)
- now reports BatchEntry errors to standard error
- patch from Will Fitzhugh to correct problems with Yank accessor
2001-03-09 Lincoln Stein <lstein@cshl.org>
- (version 1.21)
- fixed loop termination problem in Boulder::Genbank
2000-07-13 Lincoln Stein <lstein@formaggio.cshl.org>
- (version 1.20)
- Fixes to Boulder::Genbank provided by Lester Hui.
Now handles repeated multivalued features better.
2000-06-08 Lincoln Stein <lstein@cshl.org>
- Fixed Boulder::Blast::NCBI parsing error that caused it to miss some HSPs
- Fixed Boulder::Blast::{NCBI,WU} treatment of % identity -- had been returning
identity as a fraction of 1 rather than a percentage (as documented)
1999-12-02 Lincoln Stein <lstein@cshl.org>
- Fixed parameter bug in File accessor for Boulder::Genbank.
- Documented problems with flock() across NFS filesystems.
- Boulder::Genbank no longer "eats" the list of accession numbers
passed to it.