Bio::Das::ProServer::SourceAdaptor::edgeexpress
Auto-config ProServer that talks with an EdgeExpress database
$LastChangedRevision: 2 $
An auto-config ProServer that talks with an EdgeExpress database
- auto-configs segments and sources from the database
- Builds simple DAS features from the EdgeExpress database
- uses EdgeExpress perl API for enhanced speed and smart caching
[my_eedb]
state = on
adaptor = edgeexpress
transport = edgeexpress
eedb_url = mysql://<user>:<pass>@<host>:<port optional>/<database_name>
assembly = <assembly name as used in the eeDB> #eeDB is multi_species, each DAS source is not
description = description of the EdgeExpressDB this is configured for
ProServer
Bio::Das::ProServer::SourceAdaptor
EdgeExpress
EEDB::FeatureSource;
EEDB::Feature;
EEDB::Assembly;
EEDB::Chrom;
Jessica Severin <severin@gsc.riken.jp>.
The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _