Bio::Graphics::Browser2::CAlign - Compiled helper for Bio::Graphics::Browser::Realign

GBrowse documentation Contained in the GBrowse distribution.

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NAME

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Bio::Graphics::Browser2::CAlign - Compiled helper for Bio::Graphics::Browser::Realign

SYNOPSIS

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No user serviceable parts.

DESCRIPTION

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This module is used internally by Bio::Graphics::Browser2::Realign. If the module is present, the Smith-Waterman alignment will be faster. Otherwise, Bio::Graphics::Browser2::Realign will fall back to a slower pure-perl implementation.

SEE ALSO

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Bio::Graphics::Browser2::Realign

AUTHOR

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Lincoln Stein <lstein@cshl.org>.

Copyright (c) 2003 Cold Spring Harbor Laboratory

This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for disclaimers of warranty.

GBrowse documentation Contained in the GBrowse distribution. 
package Bio::Graphics::Browser2::CAlign;

use 5.005;
use Carp;
use vars qw(@ISA @EXPORT @EXPORT_OK);
use strict;

require Exporter;
require DynaLoader;

@ISA = qw(Exporter DynaLoader);
@EXPORT    = ();
@EXPORT_OK = qw(align);

bootstrap Bio::Graphics::Browser2::CAlign;

sub align {
  my $class = shift;
  my ($src,$tgt,$matrix) = @_;
  return $class->_do_alignment($src,$tgt,$matrix);
}

1;
__END__