GOBO::ClassNode - GOBO::ClassNode documentation

GOBO documentation Contained in the GOBO distribution.

Index

Code Index:

NAME

Top

GOBO::ClassNode

SYNOPSIS

Top

  printf '%s "%s"', $n->id, $n->label;

DESCRIPTION

Top

Formally, a class is a collection of instances. However, in many cases these are not instantiated in perl.

ClassNodes can either be explicitly named (GOBO::TermNode) or they can be logical boolean expressions (GOBO::ClassExpression)

          +--- InstanceNode
          |                 +--- ClassExpression
          |                 |
  Node ---+--- ClassNode ---+
          |                 |
          |                 +--- TermNode
          +--- RelationNode

Terminological note

Note the parallel terminology: ontology formalisms consist of classes (types) and instances (particulars). These should NOT be confused with their object-oriented counterparts. An instance of the GO type "nucleus" is an actual cell nucleus. These are almost never "instantiated" in the object-oriented sense, but in reality there are trillions of these instances. ClassNodes can be thought of as sets, and InstanceNodes for their extension.

Here we use the term "ClassNode" and "InstanceNode" to denote elements of the perl object model.

SEE ALSO

Top

GOBO::Graph

GOBO documentation Contained in the GOBO distribution. 
package GOBO::ClassNode;
use Moose;
use strict;
extends 'GOBO::Node';

use Moose::Util::TypeConstraints;

coerce 'GOBO::ClassNode'
      => from 'Str'
      => via { new GOBO::ClassNode(id=>$_) };

has disjoint_from_list => (is => 'rw', isa => 'ArrayRef[GOBO::ClassNode]');

sub add_disjoint_from {
    my $self = shift;
    $self->disjoint_from_list([]) unless $self->disjoint_from_list([]);
    push(@{$self->disjoint_from_list},@_);
}

1;