| MOSES-MOBY documentation | Contained in the MOSES-MOBY distribution. |
MOSES::MOBY::Def::Namespace - a definition of a BioMoby Namespace
use MOSES::MOBY::Def::Namespace;
# create a new BioMoby namespace definition
my $namespace = new MOSES::MOBY::Def::Namespace
( name => 'NCGR',
authority => 'generationcp.org',
email => 'yes@no',
description => 'This is a namespace that...',
);
# get an LSID of a namespace
print $namespace->lsid;
# get the namespace details as a string
print $namespace->toString;
# get the namespace as a string of XML
# (same format used to register the namespace)
my $xml = $namespace->toXML->toString (1);
This module contains a definition of a BioMoby Namespace. With this module, you can create a namespace, set its details and then use the output from toXML to register this namespace with a mobycentral registry.
Edward Kawas (edward.kawas [at] gmail [dot] com) Martin Senger (martin.senger [at] gmail [dot] com)
Details are in MOSES::MOBY::Base. Here just a list of them:
| MOSES-MOBY documentation | Contained in the MOSES-MOBY distribution. |
#----------------------------------------------------------------- # MOSES::MOBY::Def::Namespace # Author: Edward Kawas <edward.kawas@gmail.com>, # Martin Senger <martin.senger@gmail.com> # For copyright and disclaimer see below. # # $Id: Namespace.pm,v 1.4 2008/04/29 19:41:25 kawas Exp $ #----------------------------------------------------------------- package MOSES::MOBY::Def::Namespace; use base qw( MOSES::MOBY::Base ); use XML::LibXML; use strict; # add versioning to this module use vars qw /$VERSION/; $VERSION = sprintf "%d.%02d", q$Revision: 1.4 $ =~ /: (\d+)\.(\d+)/;
#----------------------------------------------------------------- # A list of allowed attribute names. See MOSES::MOBY::Base for details. #-----------------------------------------------------------------
{ my %_allowed = ( name => undef, authority => undef, email => undef, description => undef, lsid => undef, ); sub _accessible { my ($self, $attr) = @_; exists $_allowed{$attr} or $self->SUPER::_accessible ($attr); } sub _attr_prop { my ($self, $attr_name, $prop_name) = @_; my $attr = $_allowed {$attr_name}; return ref ($attr) ? $attr->{$prop_name} : $attr if $attr; return $self->SUPER::_attr_prop ($attr_name, $prop_name); } } #-----------------------------------------------------------------
#----------------------------------------------------------------- # init #----------------------------------------------------------------- #sub init { # my ($self) = shift; # $self->SUPER::init(); #} #----------------------------------------------------------------- # toXML #----------------------------------------------------------------- sub toXML { my $self = shift; my $root = $self->createXMLElement ('registerNamespace'); # namespace name my $node = $self->createXMLElement ("namespaceType"); $node->appendTextNode ($self->name) if $self->name; $root->addChild ($node); # email $node = $self->createXMLElement ("contactEmail"); $node->appendTextNode ($self->email) if $self->email; $root->addChild ($node); # authURI $node = $self->createXMLElement ("authURI"); $node->appendTextNode ($self->authority) if $self->authority; $root->addChild ($node); # description $node = $self->createXMLElement ("Description"); $node->addChild (XML::LibXML::CDATASection->new ($self->description)) if $self->description; $root->addChild ($node); return $root; } 1; __END__