| MOSES-MOBY documentation | Contained in the MOSES-MOBY distribution. |
MOSES::MOBY::Def::ServiceType - a BioMoby service type definition
use MOSES::MOBY::Def::ServiceType;
# create a BioMoby service type
my $s_type = new MOSES::MOBY::Def::ServiceType
( name => 'Homology',
);
# get an LSID of a service type
print $s_type->lsid;
# get the service type details as a string
print $s_type->toString;
# get the service type as a string of XML
#(same format used to register the service type)
print $s_type->toXML->toString (1);
This module contains a definition of a BioMoby Service Type. With this module, you can create a service type, set its details and then use the output from toXML to register this service type with a mobycentral registry.
Edward Kawas (edward.kawas [at] gmail [dot] com) Martin Senger (martin.senger [at] gmail [dot] com)
Details are in MOSES::MOBY::Base. Here just a list of them:
| MOSES-MOBY documentation | Contained in the MOSES-MOBY distribution. |
#----------------------------------------------------------------- # MOSES::MOBY::Def::ServiceType # Author: Edward Kawas <edward.kawas@gmail.com>, # Martin Senger <martin.senger@gmail.com> # For copyright and disclaimer see below. # # $Id: ServiceType.pm,v 1.4 2008/04/29 19:41:46 kawas Exp $ #----------------------------------------------------------------- package MOSES::MOBY::Def::ServiceType; use base qw( MOSES::MOBY::Base ); use XML::LibXML; use strict; # add versioning to this module use vars qw /$VERSION/; $VERSION = sprintf "%d.%02d", q$Revision: 1.4 $ =~ /: (\d+)\.(\d+)/;
#----------------------------------------------------------------- # A list of allowed attribute names. See MOSES::MOBY::Base for details. #-----------------------------------------------------------------
{ my %_allowed = ( name => undef, authority => undef, email => undef, description => undef, parent => undef, lsid => undef, ); sub _accessible { my ( $self, $attr ) = @_; exists $_allowed{$attr} or $self->SUPER::_accessible($attr); } sub _attr_prop { my ( $self, $attr_name, $prop_name ) = @_; my $attr = $_allowed{$attr_name}; return ref($attr) ? $attr->{$prop_name} : $attr if $attr; return $self->SUPER::_attr_prop( $attr_name, $prop_name ); } } #-----------------------------------------------------------------
#----------------------------------------------------------------- # init #----------------------------------------------------------------- sub init { my ($self) = shift; $self->SUPER::init(); $self->parent ('Service'); } #----------------------------------------------------------------- # toXML #----------------------------------------------------------------- sub toXML { my $self = shift; my $root = $self->createXMLElement ('registerServiceType'); # service type name my $node = $self->createXMLElement ("serviceType"); $node->appendTextNode ($self->name) if $self->name; $root->addChild ($node); # email $node = $self->createXMLElement ("contactEmail"); $node->appendTextNode ($self->email) if $self->email; $root->addChild ($node); # authURI $node = $self->createXMLElement ("authURI"); $node->appendTextNode ($self->authority) if $self->authority; $root->addChild ($node); # description $node = $self->createXMLElement ("Description"); $node->addChild (XML::LibXML::CDATASection->new ($self->description)) if $self->description; $root->addChild ($node); # relationship $node = $self->createXMLElement ("Relationship"); $node->setAttribute ("relationshipType", "ISA"); my $type = $self->createXMLElement ("serviceType"); $type->appendTextNode ($self->parent) if $self->parent; $node->addChild ($type); $root->addChild ($node); return $root; } 1; __END__