PDL::IO::HDF5::Group - PDL::IO::HDF5 Helper Object representing HDF5 groups.


PDL-IO-HDF5 documentation Contained in the PDL-IO-HDF5 distribution.

Index


Code Index:

NAME

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PDL::IO::HDF5::Group - PDL::IO::HDF5 Helper Object representing HDF5 groups.

DESCRIPTION

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This is a helper-object used by PDL::IO::HDF5 to interface with HDF5 format's group objects. Information on the HDF5 Format can be found at the NCSA's web site at http://hdf.ncsa.uiuc.edu/ .

SYNOPSIS

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See PDL::IO::HDF5

MEMBER DATA

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ID

ID number given to the group by the HDF5 library

name

Name of the group. (Absolute to the root group '/'. e.g. /maingroup/subgroup)

parent

Ref to parent object (file or group) that owns this group.

fileObj

Ref to the PDL::IO::HDF5 object that owns this object.

METHODS

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####---------------------------------------------------------

new

PDL::IO::HDF5::Group Constructor - creates new object

Usage:

This object will usually be created using the calling format detailed in the SYNOPSIS. The following syntax is used by the PDL::IO::HDF5 object to build the object.

   $a = new PDL::IO::HDF5:Group( name => $name, parent => $parent,
   			      fileObj => $fileObj );
	Args:
	$name				Name of the group (relative to the parent)
	$parent				Parent Object that owns this group
	$fileObj                        PDL::HDF (Top Level) object that owns this group.

DESTROY

PDL::IO::HDF5 Destructor - Closes the HDF5::Group Object.

Usage:

   No Usage. Automatically called




attrSet

Set the value of an attribute(s)

Attribute types supported are null-terminated strings and PDL matrices

Usage:

   $group->attrSet( 'attr1' => 'attr1Value',
   		    'attr2' => 'attr2 value', 
                    'attr3' => $pdl,
		    .
		    .
		    .
		   );

Returns undef on failure, 1 on success.

attrGet

Get the value of an attribute(s)

Currently the only attribute types supported are null-terminated strings.

Usage:

   my @attrs = $group->attrGet( 'attr1', 'attr2');




attrDel

Delete attribute(s)

Usage:

   $group->attrDel( 'attr1', 
      		    'attr2',
		    .
		    .
		    .
		   );

Returns undef on failure, 1 on success.

attrs

Get a list of all attribute names in a group

Usage:

   @attrs = $group->attrs;




dataset

Open an existing or create a new dataset in a group.

Usage:

   $dataset = $group->dataset('newdataset');

Returns undef on failure, 1 on success.

datasets

Get a list of all dataset names in a group. (Relative to the current group)

Usage:

   @datasets = $group->datasets;




group

Open an existing or create a new group in an existing group.

Usage:

   $newgroup = $oldgroup->group("newgroup");

Returns undef on failure, 1 on success.

groups

Get a list of all group names in a group. (Relative to the current group)

Usage:

   @groupNames = $group->groups;




_buildAttrIndex

Internal Recursive Method to build the attribute index hash for the object

For the purposes of indexing groups by their attributes, the attributes are applied hierarchial. i.e. any attributes of the higher level groups are assumed to be apply for the lower level groups.

Usage:

   $group->_buildAttrIndex($index, $currentAttrs);

    


 Input/Output:

         $index:        Total Index hash ref
	 $currentAttrs: Hash refs of the attributes valid 
	                for the current group.







IDget

Returns the HDF5 library ID for this object

Usage:

 my $ID = $groupObj->IDget;

nameGet

Returns the HDF5 Group Name for this object. (Relative to the root group)

Usage:

 my $name = $groupObj->nameGet;


PDL-IO-HDF5 documentation Contained in the PDL-IO-HDF5 distribution.
package PDL::IO::HDF5::Group;


use Carp;

use strict;

sub new{

	my $type = shift;
	my %parms = @_;
	my $self = {};

	my @DataMembers = qw( name parent fileObj);
	my %DataMembers;
	@DataMembers{ @DataMembers } = @DataMembers; # hash for quick lookup
	# check for proper supplied names:
	my $varName;
	foreach $varName(keys %parms){
 		unless( defined($DataMembers{$varName})){
			carp("Error Calling ".__PACKAGE__." Constuctor\n  \'$varName\' not a valid data member\n"); 
			return undef;
		}
		$self->{$varName} = $parms{$varName};
	}
	
	my $parent = $self->{parent};
	my $parentID = $parent->IDget;
	my $parentName = $parent->nameGet;
	my $groupName = $self->{name};
	my $groupID;
	
	# Adjust groupname to be absolute:
	if( $parentName ne '/') {  # Parent is not the root group
		$self->{name} = "$parentName/$groupName";
	}
	else{  # Parent is root group
		$self->{name} = "$parentName$groupName";
	}

	

	# Turn Error Reporting off for the following, so H5 lib doesn't complain
	#  if the group isn't found.
	PDL::IO::HDF5::H5errorOff();
	my $rc = PDL::IO::HDF5::H5Gget_objinfo($parentID, $groupName,1,0);
	PDL::IO::HDF5::H5errorOn();
	# See if the group exists:
	if(  $rc >= 0){ 
		#Group Exists open it:
		$groupID = PDL::IO::HDF5::H5Gopen($parentID, $groupName);
	}
	else{  # group didn't exist, create it:
		$groupID = PDL::IO::HDF5::H5Gcreate($parentID, $groupName, 0);
		# Clear-out the attribute index, it is no longer valid with the updates
		#  we just made.
		$self->{fileObj}->clearAttrIndex;

	}
	# Try Opening the Group First (Assume it already exists)

	if($groupID < 0 ){
		carp "Error Calling ".__PACKAGE__." Constuctor: Can't open or create group '$groupName'\n";
		return undef;
	}
		
	
	$self->{ID} = $groupID;

	bless $self, $type;

	return $self;
}	


sub DESTROY {
  my $self = shift;
  #print "In Group DEstroy\n";
  if( PDL::IO::HDF5::H5Gclose($self->{ID}) < 0){
	warn("Error closing HDF5 Group '".$self->{name}."' in file '".$self->{parentName}."'\n");
  }

}

sub attrSet {
	my $self = shift;
	
	# Attribute setting for groups is exactly like datasets
	#  Call datasets directly (This breaks OO inheritance, but is 
	#   better than duplicating code from the dataset object here
	return $self->PDL::IO::HDF5::Dataset::attrSet(@_);

  
}


sub attrGet {
	my $self = shift;
	
	
	# Attribute reading for groups is exactly like datasets
	#  Call datasets directly (This breaks OO inheritance, but is 
	#   better than duplicating code from the dataset object here
	return $self->PDL::IO::HDF5::Dataset::attrGet(@_);


}


sub attrDel {
	my $self = shift;

	my @attrs = @_; # get atribute names
	
	my $groupID = $self->{ID};
	
	my $attr;
	my $rc; #Return code returned by H5Adelete
	foreach $attr( @attrs ){
		

		# Note: We don't consider errors here as cause for aborting, we just
		#  complain using carp
		if( PDL::IO::HDF5::H5Adelete($groupID, $attr) < 0){
			carp "Error in ".__PACKAGE__." attrDel; Error Deleting attribute '$attr'\n";
		}
		
	}
	# Clear-out the attribute index, it is no longer valid with the updates
	#  we just made.
	$self->{fileObj}->clearAttrIndex;
	
	return 1;
  
}


sub attrs {
	my $self = shift;

	my $groupID = $self->{ID};
	
	my $defaultMaxSize = 256; # default max size of a attribute name

	my $noAttr = PDL::IO::HDF5::H5Aget_num_attrs($groupID); # get the number of attributes

	my $attrIndex = 0; # attribute Index

	my @attrNames = ();
	my $attributeID;
	my $attrNameSize; # size of the attribute name
	my $attrName;     # attribute name

	# Go thru each attribute and get the name
	for( $attrIndex = 0; $attrIndex < $noAttr; $attrIndex++){

		$attributeID = PDL::IO::HDF5::H5Aopen_idx($groupID, $attrIndex );

		if( $attributeID < 0){
			carp "Error in ".__PACKAGE__." attrs; Error Opening attribute number $attrIndex\n";
			next;
		}

	      	#init attrname to 256 length string (Maybe this not necessary with
		#  the typemap)
		$attrName = ' ' x 256;
		
		# Get the name
		$attrNameSize = PDL::IO::HDF5::H5Aget_name($attributeID, 256, $attrName ); 

		# If the name is greater than 256, try again with the proper size:
		if( $attrNameSize > 256 ){
			$attrName = ' ' x $attrNameSize;
			$attrNameSize = PDL::IO::HDF5::H5Aget_name($attributeID, $attrNameSize, $attrName ); 

		}

		push @attrNames, $attrName;

		# Close the attr:
		PDL::IO::HDF5::H5Aclose($attributeID);
	}


	
	return @attrNames;
  
}


sub dataset {
	my $self = shift;

	my $name = $_[0];

	my $groupID = $self->{ID}; # get the group name of the current group
	
	my $dataset = PDL::IO::HDF5::Dataset->new( name=> $name, parent => $self,
					 fileObj => $self->{fileObj} );

}



sub datasets {
	my $self = shift;

	my $groupID = $self->{ID};
	
	my @totalDatasets = PDL::IO::HDF5::H5GgetDatasetNames($groupID,".");
	
		
	
	return @totalDatasets;
  
}

sub group {
	my $self = shift;

	my $name = $_[0]; # get the group name
	
	
	my $group =  new PDL::IO::HDF5::Group( name=> $name, parent => $self,
					fileObj => $self->{fileObj}  );
					

	return $group;

}




sub groups {
	my $self = shift;

	my $groupID = $self->{ID};
	
	my @totalgroups = PDL::IO::HDF5::H5GgetGroupNames($groupID,'.');
	
		
	
	return @totalgroups;
  
}


sub _buildAttrIndex{

	my ($self, $index, $currentAttrs) = @_;
	
	# Take care of any attributes in the current group
	my @attrs = $self->attrs;
	
	my @attrValues = $self->attrGet(@attrs);
	
	# Get the group name
	my $groupName = $self->nameGet;
	
	my %indexElement; # element of the index for this group
	
	%indexElement = %$currentAttrs; # Initialize index element
				        # with attributes valid at the 
					# group above
					
	# Add (or overwrite) attributes for this group
	#    i.e. local group attributes take precedence over
	#         higher-level attributes
	@indexElement{@attrs} = @attrValues;
	
	$index->{$groupName} = \%indexElement;
	
	 
	# Now Do any subgroups: 
	my @subGroups = $self->groups;
	my $subGroup;
	
	foreach $subGroup(@subGroups){
		$self->group($subGroup)->_buildAttrIndex($index,\%indexElement);
	}
	
}

sub IDget{

	my $self = shift;
	
	return $self->{ID};
		
}

sub nameGet{

	my $self = shift;
	
	return $self->{name};
		
}

1;