| PDL-IO-HDF5 documentation | Contained in the PDL-IO-HDF5 distribution. |
PDL::IO::HDF5::Group - PDL::IO::HDF5 Helper Object representing HDF5 groups.
This is a helper-object used by PDL::IO::HDF5 to interface with HDF5 format's group objects. Information on the HDF5 Format can be found at the NCSA's web site at http://hdf.ncsa.uiuc.edu/ .
See PDL::IO::HDF5
ID number given to the group by the HDF5 library
Name of the group. (Absolute to the root group '/'. e.g. /maingroup/subgroup)
Ref to parent object (file or group) that owns this group.
Ref to the PDL::IO::HDF5 object that owns this object.
####---------------------------------------------------------
PDL::IO::HDF5::Group Constructor - creates new object
Usage:
This object will usually be created using the calling format detailed in the SYNOPSIS. The following syntax is used by the PDL::IO::HDF5 object to build the object.
$a = new PDL::IO::HDF5:Group( name => $name, parent => $parent, fileObj => $fileObj ); Args: $name Name of the group (relative to the parent) $parent Parent Object that owns this group $fileObj PDL::HDF (Top Level) object that owns this group.
PDL::IO::HDF5 Destructor - Closes the HDF5::Group Object.
Usage:
No Usage. Automatically called
Set the value of an attribute(s)
Attribute types supported are null-terminated strings and PDL matrices
Usage:
$group->attrSet( 'attr1' => 'attr1Value',
'attr2' => 'attr2 value',
'attr3' => $pdl,
.
.
.
);
Returns undef on failure, 1 on success.
Get the value of an attribute(s)
Currently the only attribute types supported are null-terminated strings.
Usage:
my @attrs = $group->attrGet( 'attr1', 'attr2');
Delete attribute(s)
Usage:
$group->attrDel( 'attr1',
'attr2',
.
.
.
);
Returns undef on failure, 1 on success.
Get a list of all attribute names in a group
Usage:
@attrs = $group->attrs;
Open an existing or create a new dataset in a group.
Usage:
$dataset = $group->dataset('newdataset');
Returns undef on failure, 1 on success.
Get a list of all dataset names in a group. (Relative to the current group)
Usage:
@datasets = $group->datasets;
Open an existing or create a new group in an existing group.
Usage:
$newgroup = $oldgroup->group("newgroup");
Returns undef on failure, 1 on success.
Get a list of all group names in a group. (Relative to the current group)
Usage:
@groupNames = $group->groups;
Internal Recursive Method to build the attribute index hash for the object
For the purposes of indexing groups by their attributes, the attributes are applied hierarchial. i.e. any attributes of the higher level groups are assumed to be apply for the lower level groups.
Usage:
$group->_buildAttrIndex($index, $currentAttrs);
Input/Output:
$index: Total Index hash ref
$currentAttrs: Hash refs of the attributes valid
for the current group.
Returns the HDF5 library ID for this object
Usage:
my $ID = $groupObj->IDget;
Returns the HDF5 Group Name for this object. (Relative to the root group)
Usage:
my $name = $groupObj->nameGet;
| PDL-IO-HDF5 documentation | Contained in the PDL-IO-HDF5 distribution. |
package PDL::IO::HDF5::Group; use Carp; use strict;
sub new{ my $type = shift; my %parms = @_; my $self = {}; my @DataMembers = qw( name parent fileObj); my %DataMembers; @DataMembers{ @DataMembers } = @DataMembers; # hash for quick lookup # check for proper supplied names: my $varName; foreach $varName(keys %parms){ unless( defined($DataMembers{$varName})){ carp("Error Calling ".__PACKAGE__." Constuctor\n \'$varName\' not a valid data member\n"); return undef; } $self->{$varName} = $parms{$varName}; } my $parent = $self->{parent}; my $parentID = $parent->IDget; my $parentName = $parent->nameGet; my $groupName = $self->{name}; my $groupID; # Adjust groupname to be absolute: if( $parentName ne '/') { # Parent is not the root group $self->{name} = "$parentName/$groupName"; } else{ # Parent is root group $self->{name} = "$parentName$groupName"; } # Turn Error Reporting off for the following, so H5 lib doesn't complain # if the group isn't found. PDL::IO::HDF5::H5errorOff(); my $rc = PDL::IO::HDF5::H5Gget_objinfo($parentID, $groupName,1,0); PDL::IO::HDF5::H5errorOn(); # See if the group exists: if( $rc >= 0){ #Group Exists open it: $groupID = PDL::IO::HDF5::H5Gopen($parentID, $groupName); } else{ # group didn't exist, create it: $groupID = PDL::IO::HDF5::H5Gcreate($parentID, $groupName, 0); # Clear-out the attribute index, it is no longer valid with the updates # we just made. $self->{fileObj}->clearAttrIndex; } # Try Opening the Group First (Assume it already exists) if($groupID < 0 ){ carp "Error Calling ".__PACKAGE__." Constuctor: Can't open or create group '$groupName'\n"; return undef; } $self->{ID} = $groupID; bless $self, $type; return $self; }
sub DESTROY { my $self = shift; #print "In Group DEstroy\n"; if( PDL::IO::HDF5::H5Gclose($self->{ID}) < 0){ warn("Error closing HDF5 Group '".$self->{name}."' in file '".$self->{parentName}."'\n"); } }
sub attrSet { my $self = shift; # Attribute setting for groups is exactly like datasets # Call datasets directly (This breaks OO inheritance, but is # better than duplicating code from the dataset object here return $self->PDL::IO::HDF5::Dataset::attrSet(@_); }
sub attrGet { my $self = shift; # Attribute reading for groups is exactly like datasets # Call datasets directly (This breaks OO inheritance, but is # better than duplicating code from the dataset object here return $self->PDL::IO::HDF5::Dataset::attrGet(@_); }
sub attrDel { my $self = shift; my @attrs = @_; # get atribute names my $groupID = $self->{ID}; my $attr; my $rc; #Return code returned by H5Adelete foreach $attr( @attrs ){ # Note: We don't consider errors here as cause for aborting, we just # complain using carp if( PDL::IO::HDF5::H5Adelete($groupID, $attr) < 0){ carp "Error in ".__PACKAGE__." attrDel; Error Deleting attribute '$attr'\n"; } } # Clear-out the attribute index, it is no longer valid with the updates # we just made. $self->{fileObj}->clearAttrIndex; return 1; }
sub attrs { my $self = shift; my $groupID = $self->{ID}; my $defaultMaxSize = 256; # default max size of a attribute name my $noAttr = PDL::IO::HDF5::H5Aget_num_attrs($groupID); # get the number of attributes my $attrIndex = 0; # attribute Index my @attrNames = (); my $attributeID; my $attrNameSize; # size of the attribute name my $attrName; # attribute name # Go thru each attribute and get the name for( $attrIndex = 0; $attrIndex < $noAttr; $attrIndex++){ $attributeID = PDL::IO::HDF5::H5Aopen_idx($groupID, $attrIndex ); if( $attributeID < 0){ carp "Error in ".__PACKAGE__." attrs; Error Opening attribute number $attrIndex\n"; next; } #init attrname to 256 length string (Maybe this not necessary with # the typemap) $attrName = ' ' x 256; # Get the name $attrNameSize = PDL::IO::HDF5::H5Aget_name($attributeID, 256, $attrName ); # If the name is greater than 256, try again with the proper size: if( $attrNameSize > 256 ){ $attrName = ' ' x $attrNameSize; $attrNameSize = PDL::IO::HDF5::H5Aget_name($attributeID, $attrNameSize, $attrName ); } push @attrNames, $attrName; # Close the attr: PDL::IO::HDF5::H5Aclose($attributeID); } return @attrNames; }
sub dataset { my $self = shift; my $name = $_[0]; my $groupID = $self->{ID}; # get the group name of the current group my $dataset = PDL::IO::HDF5::Dataset->new( name=> $name, parent => $self, fileObj => $self->{fileObj} ); }
sub datasets { my $self = shift; my $groupID = $self->{ID}; my @totalDatasets = PDL::IO::HDF5::H5GgetDatasetNames($groupID,"."); return @totalDatasets; }
sub group { my $self = shift; my $name = $_[0]; # get the group name my $group = new PDL::IO::HDF5::Group( name=> $name, parent => $self, fileObj => $self->{fileObj} ); return $group; }
sub groups { my $self = shift; my $groupID = $self->{ID}; my @totalgroups = PDL::IO::HDF5::H5GgetGroupNames($groupID,'.'); return @totalgroups; }
sub _buildAttrIndex{ my ($self, $index, $currentAttrs) = @_; # Take care of any attributes in the current group my @attrs = $self->attrs; my @attrValues = $self->attrGet(@attrs); # Get the group name my $groupName = $self->nameGet; my %indexElement; # element of the index for this group %indexElement = %$currentAttrs; # Initialize index element # with attributes valid at the # group above # Add (or overwrite) attributes for this group # i.e. local group attributes take precedence over # higher-level attributes @indexElement{@attrs} = @attrValues; $index->{$groupName} = \%indexElement; # Now Do any subgroups: my @subGroups = $self->groups; my $subGroup; foreach $subGroup(@subGroups){ $self->group($subGroup)->_buildAttrIndex($index,\%indexElement); } }
sub IDget{ my $self = shift; return $self->{ID}; }
sub nameGet{ my $self = shift; return $self->{name}; } 1;