| Prospect documentation | view source | Contained in the Prospect distribution. |
Prospect::SoapClient -- execute Prospect remotely $Id: SoapClient.pm,v 1.11 2003/11/04 01:01:32 cavs Exp $
my $in = new Bio::SeqIO( -format=> 'Fasta', '-file' => $ARGV[0] );
my $po = new Prospect::Options( seq=>1, svm=>1, global_local=>1,
templates=>['1alu', '1bgc','1eera']);
my $pf = new Prospect::SoapClient( {options=>$po,host=>'sanitas'} );
while ( my $s = $in->next_seq() ) {
my @threads = $pf->thread( $s );
}
Prospect::SoapClient is runs Prospect remotely using SOAP as the protocol. Communicate to a Prospect::SoapServer process running on a remote machine.
Name: new() Purpose: constructor Arguments: hash reference with following key/value pairs options => Prospect::Options object (required) host => hostname of SOAP server (optional) port => port of SOAP server (optional) Returns: Prospect::SoapClient
Name: thread() Purpose: return a list of Thread objects Arguments: Bio::Seq object Returns: list of Prospect::Thread objects
Name: thread_summary() Purpose: return a list of ThreadSummary objects Arguments: Bio::Seq object Returns: list of rospect2::ThreadSummary objects
Name: xml() Purpose: return xml string Arguments: Bio::Seq object Returns: string
The following functions are documented for developers' benefit. THESE SHOULD NOT BE CALLED OUTSIDE OF THIS MODULE. YOU'VE BEEN WARNED.
Name: _parseOprions() Purpose: parse Prospect::Oprions into an array for the SOAP server Arguments: Bio::Seq object Returns: string
Prospect::Options, Prospect::File, Prospect::Client, Prospect::LocalClient, Prospect::Thread, Prospect::ThreadSummary
http://www.bioinformaticssolutions.com/
| Prospect documentation | view source | Contained in the Prospect distribution. |