TM::Analysis - Topic Maps, analysis functions

  use TM::Materialized::AsTMa;
  my $tm = new TM::Materialized::AsTMa (file => 'test.atm');
  $tm->sync_in;

  Class::Trait->apply ($tm, 'TM::Analysis');

  print Dumper $tm->statistics;

  print Dumper $tm->orphanage;

package TM::Analysis;

use TM;
use Data::Dumper;

use Class::Trait 'base';
use Class::Trait 'TM::Graph';

sub statistics {
    my $self = shift;
    my %s; # result

    foreach my $a (@_ ? @_ : qw(nr_toplets nr_asserts nr_clusters)) {       # default is all
	$s{$a} = scalar $self->toplets      if $a eq 'nr_toplets';
	$s{$a} = scalar $self->match_forall if $a eq 'nr_asserts';

	if ($a eq 'nr_clusters') { # clusters
	    Class::Trait->apply ($self, 'TM::Graph');                       # make sure we can do it
	    my $clusters = $self->clusters (use_roles => 1, use_type => 1);
	    $s{$a} = scalar @$clusters;
	}
    };

    # TODO: size of map
    # TODO: payload (basenames, occurrence data, variant

    return \%s;
}


my %o;
return \%o;

sub orphanage {
    my $self = shift;

    my %types     = (); # each topic -> how many types
    my %instances = (); # each topic -> how many instances
    my %supers    = (); # each topic -> how many superclasses
    my %subs      = (); # each topic -> how many subclasses

    my ($ISA, $ISSC, $CLASS, $INSTANCE) = ('isa', 'is-subclass-of', 'class', 'instance');

    foreach my $a (values %{$self->{assertions}}) {
	$types{$a->[TM->LID]}++; $instances{$a->[TM->TYPE]}++;

	if ($a->[TM->TYPE] eq $ISA) {
	    my ($class, $instance) = @{ $a->[TM->PLAYERS] };
	    $types{$instance}++; $instances{$class}++;
	} elsif ($a->[TM->TYPE] eq $ISSC) {
	    my ($sub, $super) = @{ $a->[TM->PLAYERS] };
	    $supers{$sub}++; $subs{$super}++;
	}
    }
#warn Dumper (\%types , \%instances, \%supers, \%subs);

    my @all = map { $_->[TM->LID] } $self->toplets;
    my %o;
    foreach my $a (@_ ? @_ : qw(untyped empty unclassified unspecified)) {       # default is all
	$o{$a} = [ grep !$types{$_},     @all ] if $a eq 'untyped';
	$o{$a} = [ grep !$instances{$_}, @all ] if $a eq 'empty';
	$o{$a} = [ grep !$supers{$_},    @all ] if $a eq 'unclassified';
	$o{$a} = [ grep !$subs{$_},      @all ] if $a eq 'unspecified';
    };
    return \%o;
}

sub entropy {
    my $self = shift;

    my %S;
    my $Total;

    { # compute statistics first
	foreach my $a (values %{$self->{assertions}}) {
	    $S{ $a->[TM->TYPE] }++;
	    $Total++;
	}
    }
    return {
	map { $_->[0] => - $_->[1] * log ( $_->[1] ) }         # compute the entropy
	map { [ $_, $S{$_}/$Total ] }                          # compute their probability (schartzian)
	keys %S                                                # iterate over all assertion types
    };
}

our $VERSION  = '0.91';

1;

__END__


 item B<info>

I<$hashref> = I<$tm>->info (I<list of info items>)

returns some meta/statistical information about the map in form of
a hash reference containing one or more of the following components (you might
want to discover the return values with Data::Dumper):

 over

 item (a)

I<informational>: this hash reference contains the number of topics, the number of associations,
the UNIX date of the last modification and synchronisation with the external tied object and
a list reference to other topic maps on which this particular map depends.

 item (b)

I<warnings>

This hash reference contains a list (reference) of topic ids of topics I<not_used> anywhere in the map.
There is also a list (I<no_baseName>) of topics which do not contain any baseName (yes this is allowed in section
3.6.1 of the standard).

 item (c)

I<errors>

This component contains a list reference I<undefined_topics> containing a list of topic identifiers
of topics not defined in the map. 

 item (d)

I<statistics>

This component contains a hash reference to various statistics information, as the number of clusters,
maximum and minimum size of clusters, number of topics defined and topics mentioned.


TODOs:

 over

 item

detect cyclic dependency of topic types

 back

 back

You can control via a parameter in which information you are interested in:

Example:

   $my_info = $tm->info ('informational', 'warning', 'errors', 'statistics');


 cut

sub info {
  my $self  = shift;
  my @what  = @_;

  my $info;
  my $usage;

  foreach my $w (@what) {
    if ($w eq 'informational') {
      $info->{$w} = { #address     => $self,
		      nr_topics   => scalar @{$self->topics},
		      nr_assocs   => scalar @{$self->associations},
		      last_mod    => $self->{last_mod},
		      last_syncin => $self->{last_syncin},
		      depends     => [ map { $_->{memory}->{id} } @{$self->{depends}} ],
		      tieref      => ref ($self->{tie}),
		      id          => $self->{memory} ? $self->{memory}->{id} : undef
		    };
    } elsif ($w eq 'warnings') {
      # figure out those topics which do not seem to have a single baseName
      $info->{$w}->{'no_baseName'} = [];
      foreach my $tid (@{$self->topics()}) {
	push @{$info->{$w}->{'no_baseName'}}, $tid unless $self->topic($tid)->baseNames && @{$self->topic($tid)->baseNames};
      }
      $usage = $self->_usage() unless $usage;

sub _usage {
  my $self = shift;

  my $usage;
  # figure out which topics are used as topicRef (scope, member, role, instanceOf)
  foreach my $tid (@{$self->topics()}) {
    # instanceOfs
    foreach my $i (@{$self->topic($tid)->instanceOfs}) {
      $usage->{as_instanceOf}->{$1}++ if $i->reference->href =~ /^\#(.+)/;
      $usage->{as_instance}->{$tid}++ unless $i->reference->href eq $XTM::PSI::xtm{topic};
    }
    # scopes
    foreach my $b (@{$self->topic($tid)->baseNames}) { 
      foreach my $s (@{$b->scope->references}) {
	if ($s->href =~ /^\#(.+)/) {
	  $usage->{as_scope}->{$1}++;
	}
      }
    }
    foreach my $o (@{$self->topic($tid)->occurrences}) { 
	if ($o->instanceOf->reference->href =~ /^\#(.+)/) {
            $usage->{as_instanceOf}->{$1}++;
	}
        foreach my $r (@{$o->scope->references}) {
	    if ($r->href =~ /^\#(.+)/) {
                $usage->{as_scope}->{$1}++;
	    }
	}
    }
  }
  foreach my $aid (@{$self->associations()}) {
    # instanceOfs
    if (my $i = $self->association($aid)->instanceOf) {
      if ($i->reference->href =~ /^\#(.+)/) {
	$usage->{as_instanceOf}->{$1}++;
      }
    }
    foreach my $m (@{$self->association($aid)->members}) {
      # roles
      if ($m->roleSpec) {
	$usage->{as_role}->{$1}++ if ($m->roleSpec->reference->href =~ /^\#(.+)/);
      }
      # members
      foreach my $r (@{$m->references}) {
	$usage->{as_member}->{$1}++ if ($r->href =~ /^\#(.+)/);
      }
    }
  }
  return $usage;
}
      use Data::Dumper;
##      print STDERR Dumper \%as_instanceOf, \%as_scope, \%as_member, \%as_role;
##print Dumper $usage;

      $info->{$w}->{'not_used'} = [ 
         grep (! ( $usage->{as_instanceOf}->{$_} || 
		   $usage->{as_instance}->{$_}   || 
		   $usage->{as_scope}->{$_}      || 
		   $usage->{as_member}->{$_}     ||
		   $usage->{as_role}->{$_}), @{$self->topics()}) 
				  ];
    } elsif ($w eq 'errors') {
      $usage = $self->_usage() unless $usage;
      $info->{$w}->{'undefined_topics'} = [
         grep (!$self->is_topic($_), (keys %{$usage->{as_instanceOf}},
				      keys %{$usage->{as_instance}},
				      keys %{$usage->{as_scope}},
				      keys %{$usage->{as_member}},
				      keys %{$usage->{as_role}})
	      )
					    ];
    } elsif ($w eq 'statistics') {
      $usage       = $self->_usage() unless $usage;
#use Data::Dumper;
#print STDERR Dumper ($usage);
      my $clusters = $self->clusters();
      my ($tot, $min, $max) = (0, undef, 0);
      foreach my $c (keys %$clusters) {
	  $tot += scalar @{$clusters->{$c}};
	  $min = $min ? ($min > scalar @{$clusters->{$c}} ? scalar @{$clusters->{$c}} : $min) : scalar @{$clusters->{$c}};
	  $max =         $max < scalar @{$clusters->{$c}} ? scalar @{$clusters->{$c}} : $max;
      }

      $info->{$w} = {
		     nr_topics_defined   => scalar @{$self->topics},
		     nr_assocs           => scalar @{$self->associations},
		     nr_clusters         => scalar keys %$clusters,
		     mean_topics_per_cluster => %$clusters ? 1.0 * $tot / scalar keys %$clusters : 1, # empty map => 1 cluster (do not argue with me here)
		     max_topics_per_cluster  => $max,
		     min_topics_per_cluster  => $min,
		     nr_topics_mentioned     => $tot,
		     };
    }; # ignore other directives
  }
  return $info;
}

 =pod