GO::Parsers::ncbi_taxonomy_parser - GO::Parsers::ncbi_taxonomy_parser documentation


go-perl documentation  | view source Contained in the go-perl distribution.

Index


NAME

Top

  GO::Parsers::ncbi_taxonomy_parser 

SYNOPSIS

Top

  do not use this class directly; use GO::Parser

DESCRIPTION

Top

See ftp://ftp.ebi.ac.uk/pub/databases/taxonomy/taxonomy.dat

PARSER ARCHITECTURE

Top

This generates Stag event streams from one of the various GO flat file formats (ontology, defs, xref, associations). See GO::Parser for details

Examples of these files can be found at http://www.geneontology.org

A description of the event streams generated follows; Stag or an XML handler can be used to catch these events


go-perl documentation  | view source Contained in the go-perl distribution.