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Modules > > G > > GO

GO::Admin	GO::AnnotatedGene	GO::Annotation
GO::AnnotationProvider abstract base class defining interface for how Annotation information should be provided	GO::AnnotationProvider::AnnotationParser parses a gene annotation file	GO::AppHandle Gene Ontology Data API handle
GO::AppHandles::AppHandleAbstractSqlImpl	GO::AppHandles::AppHandleCachingImpl	GO::AppHandles::AppHandleChadoSqlImpl
GO::AppHandles::AppHandleCWrapper	GO::AppHandles::AppHandlePgImpl	GO::AppHandles::AppHandleSqlImpl
GO::Basic basic procedural interface to go-perl	GO::DebugUtils	GO::Handlers::abstract_prolog_writer
GO::Handlers::abstract_sql_writer	GO::Handlers::base	GO::Handlers::db
GO::Handlers::genericdb	GO::Handlers::godb Stores parse XML in GO DB	GO::Handlers::godb_prestore transforms OBO XML to GODB XML
GO::Handlers::go_def	GO::Handlers::go_ont	GO::Handlers::go_xref
GO::Handlers::lexanalysis	GO::Handlers::lexanalysis2sql	GO::Handlers::obj parses GO files into GO object model
GO::Handlers::obj_storable	GO::Handlers::obj_yaml	GO::Handlers::obo
GO::Handlers::obo_godb_flat	GO::Handlers::obo_html	GO::Handlers::obo_sxpr
GO::Handlers::obo_text	GO::Handlers::obo_xml	GO::Handlers::owl writes OWL
GO::Handlers::owl_to_obo_text	GO::Handlers::pathlist	GO::Handlers::prolog
GO::Handlers::rdf	GO::Handlers::summary	GO::Handlers::sxpr
GO::Handlers::tbl	GO::Handlers::text_html	GO::Handlers::xml
GO::Handlers::xsl_base	GO::IO::Analysis preliminary analysis object	GO::IO::Blast Gene Ontology Blast Reports DEPRECATED
GO::IO::Dotty	GO::IO::go_assoc	GO::IO::ObanOwl
GO::IO::OBDXML	GO::IO::RDFXML	GO::IO::XML
GO::Metadata::Panther Species info for data used by Panther Clusters	GO::Model::Association	GO::Model::CrossProduct
GO::Model::DB	GO::Model::Evidence	GO::Model::GeneProduct
GO::Model::Graph a collection of relationships over terms	GO::Model::GraphIterator	GO::Model::GraphNodeInstance a graph node located in a tree
GO::Model::LogicalDefinition	GO::Model::Modification	GO::Model::Ontology
GO::Model::Path	GO::Model::Property	GO::Model::Relationship
GO::Model::Restriction	GO::Model::Root	GO::Model::Seq
GO::Model::Species	GO::Model::Term a term or concept in an ontology	GO::Model::TreeIterator
GO::Model::Xref	GO::Node provides information about a node in the Gene Ontology	GO::ObjCache
GO::ObjFactory GO Object Factory	GO::OntologyProvider abstract base class providing API for the provision on Gene Ontology information	GO::OntologyProvider::OboParser Provides API for retrieving data from Gene Ontology obo file.
GO::OntologyProvider::OntologyParser Provides API for retrieving data from Gene Ontology files	GO::Parser parses all GO files formats and types	GO::Parsers::base_parser base class for parsers
GO::Parsers::generic_tagval_parser syntax parsing of GO .def flat files	GO::Parsers::go_assoc_parser syntax parsing of GO gene-association flat files	GO::Parsers::go_def_parser syntax parsing of GO .def flat files
GO::Parsers::go_ids_parser syntax parsing of flat files containing GO IDs.	GO::Parsers::go_ont_parser syntax parsing of GO .ontology flat files	GO::Parsers::go_xref_parser syntax parsing of GO xref flat files (eg eg2go, metacyc2go)
GO::Parsers::locuslink_parser	GO::Parsers::mesh_parser Parses Mesh ascii text files	GO::Parsers::mgi_assoc_parser parses MGI gene assoc stanza files
GO::Parsers::ncbi_taxonomy_parser	GO::Parsers::ncbi_taxon_names_parser OBO Flat file parser object	GO::Parsers::obj_emitter
GO::Parsers::obj_storable_parser	GO::Parsers::obj_yaml_parser	GO::Parsers::obo_parser
GO::Parsers::obo_text_parser OBO Flat file parser object	GO::Parsers::obo_xml_parser Parses xml made from events	GO::Parsers::owl_parser turns OWL XML into event stream
GO::Parsers::ParserEventNames exports constants corresponding to XML	GO::Parsers::references_parser syntax parsing of GO.refences files	GO::Parsers::refgenomes_parser syntax parsing of GO .def flat files
GO::Parsers::unknown_format_parser base class for parsers	GO::Parsers::xrf_abbs_parser syntax parsing of GO xrf_abbs flat files	GO::Reasoner
GO::Reference	GO::SqlWrapper	GO::Tango Tango ANnotates GO
GO::TermFinder identify GO nodes that annotate a group of genes with a significant p-value	GO::TermFinder::Native	GO::TermFinderReport::Html prints an html table of the results of GO::TermFinder
GO::TermFinderReport::Text prints results of GO::TermFinder as a text report	GO::TestHarness	GO::Utils
GO::Utils::File simply utility module for dealing with file parsing	GO::Utils::General provides some general utilities for clients of other GO classes	GO::View Creates a gif or png image for visualizing the GO DAG
GO::View::GD a helper class for GO::View to deal with the image

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